Search
0
votes
1
answer
43
views
1
answer
counting reads with muliple hits with SummarizeOverlaps
R ngs summarizeoverlaps seq written 17 days ago by Lolla • 0 • updated 3 days ago by Valerie Obenchain ♦♦ 6.4k
2
votes
1
answer
43
views
1
answer
How to write a preprocess.reads function for summarizeOverlaps that requires different logic for paired and single end reads?
genomicalignments summarizeoverlaps written 7 days ago by Ryan C. Thompson ♦ 6.5k • updated 6 days ago by Valerie Obenchain ♦♦ 6.4k
0
votes
0
answers
56
views
0
answers
Metadata sheet for DEXSeq analysis
dexseq granges summarizeoverlaps isoforms differential isoform usage written 19 days ago by A • 0
0
votes
0
answers
52
views
0
answers
large memory footprint with summarizeOverlaps method for BamViews
rsamtools genomicalignments summarizeoverlaps bamviews written 22 days ago by alex.gos90 • 10 • updated 22 days ago by Martin Morgan ♦♦ 21k
1
vote
2
answers
82
views
2
answers
deconvole counts per feature from summerizedOverlaps with GRangesLists
grangeslist summarizeoverlaps summarizedexperiment rangedsummarizedexperiment written 29 days ago by cosmin • 0
0
votes
1
answer
85
views
1
answer
Minimum overlap for reads to be counted in summarizeoverlaps
R summarizeoverlaps written 8 weeks ago by Lolla • 0 • updated 8 weeks ago by Valerie Obenchain ♦♦ 6.4k
1
vote
1
answer
126
views
1
answer
How can I retrieve the gene names of my count matrix?
rnaseq summarizeoverlaps count matrix written 11 weeks ago by johnsonn573 • 0 • updated 11 weeks ago by James W. MacDonald ♦ 46k
1
vote
1
answer
180
views
1
answer
Difference between SummarizeOverlaps and HTSeq
R summarizeoverlaps htseqcounts written 5 months ago by Walter F. Baumann • 10 • updated 5 months ago by thokall • 100
1
vote
1
answer
267
views
1
answer
Problems with summarizeOverlaps
rnaseq bioconductor summarizeoverlaps written 11 months ago by Walter F. Baumann • 10 • updated 11 months ago by Martin Morgan ♦♦ 21k
1
vote
0
answers
327
views
0
answers
generate table of counts with strand-specific paired-end RNA-seq data
summarizeoverlaps paired-end reads readgalignmentpairs written 12 months ago by teresati • 10
1
vote
1
answer
338
views
1
answer
summarizeOverlaps counting exons and 5UTR reads
rnaseq summarizeoverlaps written 13 months ago by Walter F. Baumann • 10 • updated 13 months ago by Hervé Pagès ♦♦ 13k
3
votes
3
answers
352
views
3
answers
Comparing two RNAseq experiments using summarizeOverlaps
rnaseq R bioconductor summarizeoverlaps rna-seq written 13 months ago by Walter F. Baumann • 10 • updated 13 months ago by Hervé Pagès ♦♦ 13k
2
votes
1
answer
209
views
1
answer
question about summrizeOverlaps
summarizeoverlaps written 14 months ago by Ou, Jianhong • 1.0k • updated 14 months ago by Martin Morgan ♦♦ 21k
0
votes
1
answer
289
views
1
answer
GenomicAlignment: Import genomic intervals described in a bed file into "summarizeOverlaps"
genomicalignments summarizeoverlaps written 14 months ago by JunLVI • 40 • updated 14 months ago by James W. MacDonald ♦ 46k
2
votes
1
answer
335
views
1
answer
DESeq2 "summarizeOverlaps" "se" not working, freezing, or too slow
genomicfeatures genomicalignments bioclite bioconductor summarizeoverlaps written 16 months ago by BioinfStudent • 0 • updated 16 months ago by Michael Love ♦ 17k
2
votes
2
answers
440
views
2
answers
SystemPipeR: alignments with ambiguous pairing were dumped.
rnaseq R systempiper summarizeoverlaps tophat written 17 months ago by abass.conteh • 0 • updated 17 months ago by Thomas Girke • 1.6k
1
vote
0
answers
614
views
0
answers
Error in summarizeOverlaps: Error in names(res) <- nms; 'names' attribute [15] must be the same length as the vector [2]
biocparallel software error summarizeoverlaps written 19 months ago by chriad • 10
0
votes
1
answer
407
views
1
answer
summarizeOverlaps; Problem(s) SortedByQueryHits; 'queryHits(x)' must be sorted
genomicalignments summarizeoverlaps written 20 months ago by philipp.wahle • 0
4
votes
1
answer
1.1k
views
1
answer
Problem with summarizeOverlaps() when reading >1 BAM file: "stop worker failed"
rnaseq summarizeoverlaps bplapply read counting rangedsummarizedexperiment written 21 months ago by ErickF • 20
2
votes
1
answer
452
views
1
answer
Running featureCounts() in 'IntersectionStrict' mode
rsubread featurecounts summarizeoverlaps written 22 months ago by Jon Manning • 90
2
votes
1
answer
565
views
1
answer
SummarizeOverlaps without reference genome ?
summarizeoverlaps written 2.1 years ago by jean.keller • 10 • updated 2.1 years ago by Valerie Obenchain ♦♦ 6.4k
0
votes
0
answers
710
views
0
answers
summarizeOverlaps on stranded paired end RNAseq data
summarizeoverlaps written 2.1 years ago by vedran.franke • 0
2
votes
3
answers
514
views
3
answers
Minimum overlap for summarizeOverlaps() to call hit
summarizeoverlaps bedtools written 2.1 years ago by tmartinez • 0
0
votes
0
answers
436
views
0
answers
No reads with summarizeOverlaps
rnaseq summarizeoverlaps written 2.2 years ago by diogo.camacho.2008 • 0
0
votes
1
answer
520
views
1
answer
Question about the function "summarizeOverlaps"
genomicalignments summarizeoverlaps written 2.2 years ago by myf3748 • 0 • updated 2.2 years ago by Michael Love ♦ 17k
<prev • 38 results • page 1 of 2 • next >
Recent...
Replies
Votes
Awards • All »
Locations • All »
  • Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia, 17 minutes ago
  • United States, 28 minutes ago
  • Denali, 41 minutes ago
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 195 users visited in the last hour