Search
1
vote
1
answer
170
views
1
answer
Problems with summarizeOverlaps
rnaseq bioconductor summarizeoverlaps written 4 months ago by Walter F. Baumann • 0 • updated 4 months ago by Martin Morgan ♦♦ 20k
0
votes
0
answers
163
views
0
answers
generate table of counts with strand-specific paired-end RNA-seq data
summarizeoverlaps paired-end reads readgalignmentpairs written 5 months ago by teresati • 0
1
vote
1
answer
189
views
1
answer
summarizeOverlaps counting exons and 5UTR reads
rnaseq summarizeoverlaps written 6 months ago by Walter F. Baumann • 0 • updated 6 months ago by Hervé Pagès ♦♦ 12k
3
votes
3
answers
220
views
3
answers
Comparing two RNAseq experiments using summarizeOverlaps
rnaseq R bioconductor summarizeoverlaps rna-seq written 7 months ago by Walter F. Baumann • 0 • updated 7 months ago by Hervé Pagès ♦♦ 12k
2
votes
1
answer
149
views
1
answer
question about summrizeOverlaps
summarizeoverlaps written 7 months ago by Ou, Jianhong • 990 • updated 7 months ago by Martin Morgan ♦♦ 20k
0
votes
1
answer
182
views
1
answer
GenomicAlignment: Import genomic intervals described in a bed file into "summarizeOverlaps"
genomicalignments summarizeoverlaps written 7 months ago by JunLVI • 40 • updated 7 months ago by James W. MacDonald ♦ 44k
2
votes
1
answer
232
views
1
answer
DESeq2 "summarizeOverlaps" "se" not working, freezing, or too slow
genomicfeatures genomicalignments bioclite bioconductor summarizeoverlaps written 9 months ago by BioinfStudent • 0 • updated 9 months ago by Michael Love ♦ 13k
2
votes
2
answers
291
views
2
answers
SystemPipeR: alignments with ambiguous pairing were dumped.
rnaseq R systempiper summarizeoverlaps tophat written 10 months ago by abass.conteh • 0 • updated 10 months ago by Thomas Girke • 1.6k
0
votes
0
answers
411
views
0
answers
Error in summarizeOverlaps: Error in names(res) <- nms; 'names' attribute [15] must be the same length as the vector [2]
biocparallel software error summarizeoverlaps written 12 months ago by chriad • 0
0
votes
1
answer
283
views
1
answer
summarizeOverlaps; Problem(s) SortedByQueryHits; 'queryHits(x)' must be sorted
genomicalignments summarizeoverlaps written 13 months ago by philipp.wahle • 0
4
votes
1
answer
678
views
1
answer
Problem with summarizeOverlaps() when reading >1 BAM file: "stop worker failed"
rnaseq summarizeoverlaps bplapply read counting rangedsummarizedexperiment written 14 months ago by ErickF • 20
2
votes
1
answer
335
views
1
answer
Running featureCounts() in 'IntersectionStrict' mode
rsubread featurecounts summarizeoverlaps written 15 months ago by Jon Manning • 90
2
votes
1
answer
433
views
1
answer
SummarizeOverlaps without reference genome ?
summarizeoverlaps written 18 months ago by jean.keller • 10 • updated 18 months ago by Valerie Obenchain ♦♦ 6.2k
0
votes
0
answers
508
views
0
answers
summarizeOverlaps on stranded paired end RNAseq data
summarizeoverlaps written 18 months ago by vedran.franke • 0
2
votes
3
answers
387
views
3
answers
Minimum overlap for summarizeOverlaps() to call hit
summarizeoverlaps bedtools written 19 months ago by tmartinez • 0
0
votes
0
answers
312
views
0
answers
No reads with summarizeOverlaps
rnaseq summarizeoverlaps written 19 months ago by diogo.camacho.2008 • 0
0
votes
1
answer
403
views
1
answer
Question about the function "summarizeOverlaps"
genomicalignments summarizeoverlaps written 19 months ago by myf3748 • 0 • updated 19 months ago by Michael Love ♦ 13k
0
votes
1
answer
417
views
1
answer
Using summarizeOverlaps for bacterial genomes
summarizeoverlaps bacteria e coli unique reads written 19 months ago by as9309 • 0 • updated 19 months ago by Valerie Obenchain ♦♦ 6.2k
4
votes
1
answer
453
views
1
answer
Enquiry about the summarizeOverlaps() function
summarizeoverlaps rna-seq summarizedexperiment low counts count matrix written 19 months ago by shania90.lk • 10 • updated 19 months ago by Valerie Obenchain ♦♦ 6.2k
1
vote
1
answer
399
views
1
answer
summarizeOverlaps error with hg38
summarizeoverlaps written 20 months ago by Tarca, Adi • 560 • updated 20 months ago by Hervé Pagès ♦♦ 12k
2
votes
2
answers
828
views
2
answers
chromosome name in summarizeOverlaps for RNASeq data
rnaseq annotation counts summarizeoverlaps written 20 months ago by bioprog • 0
1
vote
1
answer
365
views
1
answer
Feasibility of adapting iRanges to count concomittant drug therapy
summarizeoverlaps written 21 months ago by glipori • 0 • updated 21 months ago by Steve Lianoglou ♦ 12k
2
votes
1
answer
1.2k
views
1
answer
GAGE pathway analysis (R/Bioconductor): summarizeOverlaps error
gage summarizeoverlaps written 22 months ago by user31888 • 30 • updated 22 months ago by Valerie Obenchain ♦♦ 6.2k
0
votes
2
answers
455
views
2
answers
Default Rapidr invalid class “SummarizedExperiment”
software error R summarizeoverlaps rapidr written 2.0 years ago by Pau Marc Muñoz Torres • 20
8
votes
3
answers
3.6k
views
5 follow
3
answers
could not find symbol "keepNA" in environment of the generic function
genomicranges genomicalignments R summarizeoverlaps function written 2.2 years ago by Assa Yeroslaviz • 1.3k • updated 2.2 years ago by Mathilde • 0
<prev • 30 results • page 1 of 2 • next >
Recent...
Replies
Votes
Awards • All »
Locations • All »
  • United States, 13 minutes ago
  • The Scripps Research Institute, La Jolla, CA, 17 minutes ago
  • EMBL Heidelberg / de.NBI, 27 minutes ago
  • UCPH, 1 hour ago
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 140 users visited in the last hour