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1
vote
1
answer
123
views
1
answer
Problems with summarizeOverlaps
rnaseq bioconductor summarizeoverlaps written 10 weeks ago by Walter F. Baumann • 0 • updated 10 weeks ago by Martin Morgan ♦♦ 20k
0
votes
0
answers
118
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0
answers
generate table of counts with strand-specific paired-end RNA-seq data
summarizeoverlaps paired-end reads readgalignmentpairs written 3 months ago by teresati • 0
1
vote
1
answer
154
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1
answer
summarizeOverlaps counting exons and 5UTR reads
rnaseq summarizeoverlaps written 4 months ago by Walter F. Baumann • 0 • updated 4 months ago by Hervé Pagès ♦♦ 12k
3
votes
3
answers
181
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3
answers
Comparing two RNAseq experiments using summarizeOverlaps
rnaseq R bioconductor summarizeoverlaps rna-seq written 4 months ago by Walter F. Baumann • 0 • updated 4 months ago by Hervé Pagès ♦♦ 12k
2
votes
1
answer
129
views
1
answer
question about summrizeOverlaps
summarizeoverlaps written 4 months ago by Ou, Jianhong • 990 • updated 4 months ago by Martin Morgan ♦♦ 20k
0
votes
1
answer
150
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1
answer
GenomicAlignment: Import genomic intervals described in a bed file into "summarizeOverlaps"
genomicalignments summarizeoverlaps written 5 months ago by JunLVI • 40 • updated 5 months ago by James W. MacDonald ♦ 43k
2
votes
1
answer
205
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1
answer
DESeq2 "summarizeOverlaps" "se" not working, freezing, or too slow
genomicfeatures genomicalignments bioclite bioconductor summarizeoverlaps written 7 months ago by BioinfStudent • 0 • updated 7 months ago by Michael Love ♦ 12k
2
votes
2
answers
249
views
2
answers
SystemPipeR: alignments with ambiguous pairing were dumped.
rnaseq R systempiper summarizeoverlaps tophat written 8 months ago by abass.conteh • 0 • updated 8 months ago by Thomas Girke • 1.6k
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0
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361
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0
answers
Error in summarizeOverlaps: Error in names(res) <- nms; 'names' attribute [15] must be the same length as the vector [2]
biocparallel software error summarizeoverlaps written 10 months ago by chriad • 0
0
votes
1
answer
251
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1
answer
summarizeOverlaps; Problem(s) SortedByQueryHits; 'queryHits(x)' must be sorted
genomicalignments summarizeoverlaps written 11 months ago by philipp.wahle • 0
4
votes
1
answer
550
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1
answer
Problem with summarizeOverlaps() when reading >1 BAM file: "stop worker failed"
rnaseq summarizeoverlaps bplapply read counting rangedsummarizedexperiment written 12 months ago by ErickF • 20
2
votes
1
answer
305
views
1
answer
Running featureCounts() in 'IntersectionStrict' mode
rsubread featurecounts summarizeoverlaps written 13 months ago by Jon Manning • 90
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1
answer
405
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1
answer
SummarizeOverlaps without reference genome ?
summarizeoverlaps written 16 months ago by jean.keller • 10 • updated 16 months ago by Valerie Obenchain ♦♦ 6.2k
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0
answers
452
views
0
answers
summarizeOverlaps on stranded paired end RNAseq data
summarizeoverlaps written 16 months ago by vedran.franke • 0
2
votes
3
answers
354
views
3
answers
Minimum overlap for summarizeOverlaps() to call hit
summarizeoverlaps bedtools written 16 months ago by tmartinez • 0
0
votes
0
answers
279
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0
answers
No reads with summarizeOverlaps
rnaseq summarizeoverlaps written 17 months ago by diogo.camacho.2008 • 0
0
votes
1
answer
361
views
1
answer
Question about the function "summarizeOverlaps"
genomicalignments summarizeoverlaps written 17 months ago by myf3748 • 0 • updated 17 months ago by Michael Love ♦ 12k
0
votes
1
answer
378
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1
answer
Using summarizeOverlaps for bacterial genomes
summarizeoverlaps bacteria e coli unique reads written 17 months ago by as9309 • 0 • updated 17 months ago by Valerie Obenchain ♦♦ 6.2k
4
votes
1
answer
405
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1
answer
Enquiry about the summarizeOverlaps() function
summarizeoverlaps rna-seq summarizedexperiment low counts count matrix written 17 months ago by shania90.lk • 10 • updated 17 months ago by Valerie Obenchain ♦♦ 6.2k
1
vote
1
answer
362
views
1
answer
summarizeOverlaps error with hg38
summarizeoverlaps written 18 months ago by Tarca, Adi • 560 • updated 18 months ago by Hervé Pagès ♦♦ 12k
2
votes
2
answers
724
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2
answers
chromosome name in summarizeOverlaps for RNASeq data
rnaseq annotation counts summarizeoverlaps written 18 months ago by bioprog • 0
1
vote
1
answer
354
views
1
answer
Feasibility of adapting iRanges to count concomittant drug therapy
summarizeoverlaps written 19 months ago by glipori • 0 • updated 19 months ago by Steve Lianoglou ♦ 12k
2
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1
answer
1.1k
views
1
answer
GAGE pathway analysis (R/Bioconductor): summarizeOverlaps error
gage summarizeoverlaps written 20 months ago by user31888 • 30 • updated 20 months ago by Valerie Obenchain ♦♦ 6.2k
0
votes
2
answers
419
views
2
answers
Default Rapidr invalid class “SummarizedExperiment”
software error R summarizeoverlaps rapidr written 22 months ago by Pau Marc Muñoz Torres • 20
8
votes
3
answers
3.4k
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5 follow
3
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could not find symbol "keepNA" in environment of the generic function
genomicranges genomicalignments R summarizeoverlaps function written 2.1 years ago by Assa Yeroslaviz • 1.3k • updated 2.0 years ago by Mathilde • 0
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