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Comment: fgsea stuck in an infinite loop in the middle of the run
by
BioinfGuru
▴ 70
Try running it on cluster 2 without the for loop. It will tell you if the loop is the problem or not.
Answer: PCA analysis RNA-Seq QC looks strange?
by
BioinfGuru
▴ 70
You should check your data for batch effects before running deseq2. The wild type sample way out on its own is clearly an issue 1) Known b…
Answer: How to use compareCluster in ClusterProfiler?
by
Guido Hooiveld
★ 4.0k
First of all, check the help page of `compareCluster` and [here][1] for some example code. Whether or not to use all genes, or a selectio…
Comment: AffylmGUI does not start wit R 4.4.1
by
richardallenfriedmanbrooklyn
▴ 20
Gordon, Thank you as always for your reply. It turns out that I have Tcl/Tk installed elsewhere than in /usr/local/lib ``` s -l /usr/local/…
Comment: Diffbind: edgeR or DESeq2 ?
by
khanwaled68
• 0
DBA_SCORE_TMM_MINUS_EFFECTIVE: Purpose: This scoring method leverages the Trimmed Mean of M-values (TMM) normalization from the edgeR pack…
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Answer: AffylmGUI does not start wit R 4.4.1
DESeq2 for ChIP-seq differential peaks
A: How to arrange multiple Gviz plots into a multipanelfigure?
Answer: How to add gene symbol in GeneRegionTrack in Gviz
Answer: How to add gene symbol in GeneRegionTrack in Gviz
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