Showing: tximport • reset
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Normalizing counts using TIN metric before DESeq2
deseq2 salmon tximport written 2 days ago by hsbio • 0 • updated 2 days ago by Michael Love ♦ 25k
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Silent error in tximport after installing GEOquery
tximport written 9 days ago by penny.lane • 0
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RNA-seq with Salmon and tximport
rna-seq salmon tximport written 23 days ago by woojoy14 • 0 • updated 23 days ago by James W. MacDonald ♦ 51k
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tximport query for un-normalized and TPM data
tximport written 5 weeks ago by HKS • 0 • updated 5 weeks ago by Michael Love ♦ 25k
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tximport not working on tsv files
tximport written 6 weeks ago by HKS • 0
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tximport Error in attr(x, "names") <- as.character(value) : 'names' attribute [2] must be the same length as the vector [1]
rnaseq software error R tximport written 6 weeks ago by caranlove • 0 • updated 6 weeks ago by Michael Love ♦ 25k
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windows tximport fail
rhdf5 tximport written 6 weeks ago by rhart • 0 • updated 6 weeks ago by Michael Love ♦ 25k
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How to merge two tximport object into one dataset for DESeqDataSetFromTximport
deseq2 tximport written 7 weeks ago by rensanhao • 0 • updated 7 weeks ago by Michael Love ♦ 25k
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tximport transcript missing
deseq2 salmon tximport written 8 weeks ago by mr6518849 • 0
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tximport in DESeq2 problem
tximport written 10 weeks ago by abskumar • 0 • updated 10 weeks ago by Michael Love ♦ 25k
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tximport::summarizeToGene fails to ignoreTxVersion
annotationdbi tximport tximeta written 11 weeks ago by Benjamin • 0
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Data downloaded from GEO has raw transcript count matrix- can I still use tximport? Collapse raw transcript count matrix to GENE LEVEL
tximport collapse written 11 weeks ago by agm • 0 • updated 11 weeks ago by Michael Love ♦ 25k
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Get gene level summaries from table of transcript level quantification
deseq2 tximport written 11 weeks ago by ljmills • 0 • updated 11 weeks ago by James W. MacDonald ♦ 51k
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tximport from Galaxy output
normalization tximport written 3 months ago by agustin.gonvi • 10 • updated 3 months ago by Michael Love ♦ 25k
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Importing Salmon counts with tximport with host and virus genomes
salmon tximport written 3 months ago by rbenel • 0 • updated 3 months ago by Michael Love ♦ 25k
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tximport discrepancy between TPMs and lengthScaledTPMs
tximport written 3 months ago by igor • 30 • updated 3 months ago by Michael Love ♦ 25k
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76
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inferential replicates in Kallisto when summarising values via tximport
tximport written 3 months ago by Mozart • 10 • updated 3 months ago by Michael Love ♦ 25k
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Importing transcript abundance datasets generated with Salmon 0.14.0
tximport written 3 months ago by edoardobertolini • 0 • updated 3 months ago by Michael Love ♦ 25k
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how to set offset matrix to Deseq2 differential analysis
deseq2 tximport kallisto written 3 months ago by qwzhang0601 • 0 • updated 3 months ago by Michael Love ♦ 25k
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118
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Salmon / tximport
deseq2 tximport written 3 months ago by polaxgr • 10 • updated 3 months ago by Michael Love ♦ 25k
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Correlation of gene expression values using tpms and normalized counts
deseq2 tximport written 4 months ago by taliaferrojm • 0 • updated 4 months ago by Michael Love ♦ 25k
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Correct use of tximport in combination with edgeR cpm()
edger tximport written 4 months ago by ATpoint • 20 • updated 4 months ago by James W. MacDonald ♦ 51k
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119
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Tximport and pseudo alignment with Kallisto
deseq2 tximport kallisto written 4 months ago by Mozart • 10 • updated 4 months ago by Michael Love ♦ 25k
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96
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Robust FPM with normalization factors (from tximport)?
normalization deseq2 tximport written 4 months ago by Roger • 0 • updated 4 months ago by Michael Love ♦ 25k
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output of the function "makeCountsFromAbundance"
tximport written 4 months ago by capricygcapricyg • 0 • updated 4 months ago by James W. MacDonald ♦ 51k
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