Showing: tximport • reset
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Normalisation for count data visualisation only
normalization deseq2 salmon tximport written 10 days ago by Alex So • 0 • updated 9 days ago by Michael Love ♦ 22k
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Counts, abundance in Tximport
tximport written 15 days ago by hong • 0
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txi <- tximport(files, type="salmon", tx2gene=tx2gene) Error in tximport(files, type = "salmon", tx2gene = tx2gene) : all(file.exists(files)) is not TRUE
deseq2 tximport files file.path file.exists written 21 days ago by Leo K • 0
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[deseq2] normalization between samples after merging transcripts into genes
deseq2 tximport written 4 weeks ago by marie • 0 • updated 28 days ago by Michael Love ♦ 22k
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tximport question on the values contained in "counts" and "abundance" matrices
tximport written 7 weeks ago by HKS • 0 • updated 4 weeks ago by James W. MacDonald ♦ 49k
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Htseq files import via tximport
tximport importer written 4 weeks ago by sally.badawi • 0 • updated 4 weeks ago by Michael Love ♦ 22k
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tximport: question concerning 'bias corrected counts without an offset' method
deseq2 tximport written 4 weeks ago by Thomas Bradley • 0 • updated 4 weeks ago by Michael Love ♦ 22k
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DESeqFromMatrix for 3'end data via tximport; non-integer values
deseq2 tximport written 7 weeks ago by cats_dogs • 10 • updated 7 weeks ago by Michael Love ♦ 22k
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tximport: Error in medianLengthOverIsoform
dexseq deseq2 tximport written 7 weeks ago by d-joester • 20
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Error : Salmon tximport to DESeq2
deseq2 tximport written 9 weeks ago by saddamhusain77 • 0 • updated 9 weeks ago by Michael Love ♦ 22k
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tximport error with kallisto .h5 files
deseq2 tximport kallisto written 9 weeks ago by steve.standage • 0 • updated 9 weeks ago by Michael Love ♦ 22k
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R failing to load genome files from EnsDb.Hsapiens.v86
ensembldb tximport ensdb.hsapiens.v86 written 4 months ago by michaelschoeber • 10 • updated 10 weeks ago by Bioconductor Community ♦♦ 0
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tximport: kallisto .h5 files not recognized as such when they have a different name
tximport kallisto written 11 weeks ago by Lucas Carey • 40 • updated 11 weeks ago by Gordon Smyth ♦ 36k
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tximport of 3 tagged RNA-seq counts from Salmon for downstream analysis with DESeq2
rnaseq deseq2 tximport 3' tagged rna written 12 weeks ago by rbenel • 0 • updated 12 weeks ago by Michael Love ♦ 22k
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Correct usage of tximport counts in edgeR without offset matrix.
edger rna-seq tximport written 3 months ago by ttekath • 0 • updated 3 months ago by James W. MacDonald ♦ 49k
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tximport and its version
stringtie tximport rna-seq analysis written 4 months ago by Mithil Gaikwad • 0 • updated 4 months ago by James W. MacDonald ♦ 49k
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Getting an error trying to do tximportData tutorial
deseq2 tximport written 4 months ago by mogasawara • 0 • updated 4 months ago by Michael Love ♦ 22k
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importing Tximport to DESeq2 for a time series experiment
deseq2 tximport written 4 months ago by ahmedaalkarim • 0 • updated 4 months ago by Michael Love ♦ 22k
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How tximport summerize transcript-level abundance to gene-level
tximport written 4 months ago by lkianmehr • 0 • updated 4 months ago by Michael Love ♦ 22k
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How get genename by tximport
tximport genename written 4 months ago by lkianmehr • 0 • updated 4 months ago by Michael Love ♦ 22k
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What is the expected location of bootstrap samples relative to quant.sf file ?
salmon tximport tximportdata written 4 months ago by fcuy047 • 0
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trouble importing data for DEseq2 workflow
deseq2 tutorial pasilla tximport tximportdata written 5 months ago by Stanley Yang • 0 • updated 5 months ago by Michael Love ♦ 22k
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tximport and de novo transcriptome
tximport salmon rna seq de novo written 5 months ago by RMRG • 10 • updated 5 months ago by James W. MacDonald ♦ 49k
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Help with error produced when using makeTxDbFromBiomart
tximport tximport rnaseq written 6 months ago by pat20 • 0 • updated 6 months ago by James W. MacDonald ♦ 49k
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Get the countsFromAbundance as limma input
limma deseq2 differential expression tximport written 6 months ago by Darklings • 0 • updated 6 months ago by Gordon Smyth ♦ 36k
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