2
votes
2
answers
89
views
2
answers
2
votes
2
answers
100
views
2
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[DESeq2] Different results from tutorial
deseq2 tximport tximportdata written 26 days ago by changhan11100 • updated 25 days ago by Michael Love18k
0
votes
1
answer
116
views
1
answer
0
votes
1
answer
74
views
1
answer
2
votes
2
answers
185
views
2
answers
1
vote
1
answer
483
views
1
answer
tximport using for data generated from other tools
salmon tximport express written 12 months ago by saumya.kumar0 • updated 5 weeks ago by Michael Love18k
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votes
1
answer
74
views
1
answer
there is no "tx2gene.gencode.v27.csv" in tximportData
tximport written 5 weeks ago by krwyaong.ju0 • updated 5 weeks ago by Michael Love18k
0
votes
1
answer
100
views
1
answer
Tutorial: Importing multiple .h5 files using tximport
tutorial tximport written 5 weeks ago by nelson.s.garcia0 • updated 5 weeks ago by Steve Lianoglou12k
1
vote
1
answer
83
views
1
answer
Post-processing RNA-Seq after tximport
deseq2 tximport salmon rna seq ruv-seq written 6 weeks ago by mad6kj0 • updated 6 weeks ago by Michael Love18k
18
votes
2
answers
2.9k
views
6 follow
2
answers
1
vote
1
answer
114
views
1
answer
processing of (salmon) gene counts for eqtl analysis
tmm salmon gene length tximport eqtl written 7 weeks ago by VSM120 • updated 7 weeks ago by Michael Love18k
1
vote
1
answer
123
views
1
answer
0
votes
1
answer
186
views
1
answer
0
votes
1
answer
129
views
1
answer
0
votes
1
answer
97
views
1
answer
filtering lowly expressed genes before or after normalization?
edger tximport written 12 weeks ago by burcu.atasu0 • updated 12 weeks ago by Michael Love18k
1
vote
1
answer
163
views
1
answer
1
vote
1
answer
110
views
1
answer
0
votes
1
answer
82
views
1
answer
tximport error with Salmon in DESeq2 pipeline
deseq2 salmon tximport written 3 months ago by seyfim0 • updated 3 months ago by Michael Love18k
0
votes
1
answer
120
views
1
answer
Subsetting a tximport object
tximport written 3 months ago by scanchi0 • updated 3 months ago by jennietodd1410
0
votes
1
answer
105
views
1
answer
use tximport's countsFromAbundance when using DESeq2
rnaseq normalization deseq2 salmon tximport written 3 months ago by ginlucks0 • updated 3 months ago by Michael Love18k
2
votes
1
answer
102
views
1
answer
tximport failing at importing TPM instead of FPKM
rnaseq tximport rsem written 3 months ago by fresard.laure0 • updated 3 months ago by rosabellascottgm0
3
votes
1
answer
352
views
1
answer
0
votes
1
answer
107
views
1
answer
Support site search not finding posts?
search tximport limma-trend written 4 months ago by Jenny Drnevich1.9k • updated 4 months ago by James W. MacDonald46k
4
votes
1
answer
198
views
1
answer
Trouble with Tximport for edgeR
edger tximport written 4 months ago by Xiang Wang0 • updated 4 months ago by Gordon Smyth33k
3
votes
2
answers
197
views
2
answers
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