1
vote
1
answer
49
views
1
answer
2
votes
2
answers
72
views
2
answers
tximport and de novo transcriptome
tximport salmon rna seq de novo written 21 days ago by RMRG10 • updated 20 days ago by James W. MacDonald48k
1
vote
2
answers
57
views
2
answers
Help with error produced when using makeTxDbFromBiomart
tximport tximport rnaseq written 5 weeks ago by pat200 • updated 5 weeks ago by James W. MacDonald48k
2
votes
2
answers
161
views
2
answers
Get the countsFromAbundance as limma input
limma deseq2 differential expression tximport written 6 weeks ago by Darklings0 • updated 6 weeks ago by Gordon Smyth35k
1
vote
1
answer
98
views
1
answer
0
votes
1
answer
107
views
1
answer
0
votes
1
answer
167
views
1
answer
tximport allfile.exists(files)--> FALSE
tximport written 12 weeks ago by gilles.charpigny0 • updated 12 weeks ago by James W. MacDonald48k
0
votes
1
answer
86
views
1
answer
tximport latest version on bioconductor and bioconda
tximport written 3 months ago by sebio0 • updated 3 months ago by James W. MacDonald48k
0
votes
1
answer
56
views
1
answer
Tximport Input file
tximport written 3 months ago by akhilkrishnavs0 • updated 3 months ago by Michael Love19k
0
votes
1
answer
75
views
1
answer
Using tximport on RSEM abundance date
rnaseq tximport rsem written 3 months ago by raeganlynn1230 • updated 3 months ago by Michael Love19k
1
vote
1
answer
113
views
1
answer
0
votes
1
answer
100
views
1
answer
countsFromAbundance for gene-level RSEM import in tximport
tximport rsem written 3 months ago by celi00010 • updated 3 months ago by Michael Love19k
2
votes
2
answers
163
views
2
answers
2
votes
2
answers
170
views
2
answers
[DESeq2] Different results from tutorial
deseq2 tximport tximportdata written 4 months ago by changhan11100 • updated 4 months ago by Michael Love19k
0
votes
1
answer
249
views
1
answer
0
votes
1
answer
160
views
1
answer
2
votes
2
answers
271
views
2
answers
1
vote
1
answer
693
views
1
answer
tximport using for data generated from other tools
salmon tximport express written 16 months ago by saumya.kumar0 • updated 5 months ago by Michael Love19k
0
votes
1
answer
263
views
1
answer
there is no "tx2gene.gencode.v27.csv" in tximportData
tximport written 5 months ago by krwyaong.ju0 • updated 5 months ago by Michael Love19k
0
votes
1
answer
212
views
1
answer
Tutorial: Importing multiple .h5 files using tximport
tutorial tximport written 5 months ago by nelson.s.garcia0 • updated 5 months ago by Steve Lianoglou12k
1
vote
1
answer
161
views
1
answer
Post-processing RNA-Seq after tximport
deseq2 tximport salmon rna seq ruv-seq written 5 months ago by mad6kj0 • updated 5 months ago by Michael Love19k
18
votes
2
answers
3.9k
views
6 follow
2
answers
1
vote
1
answer
198
views
1
answer
processing of (salmon) gene counts for eqtl analysis
tmm salmon gene length tximport eqtl written 5 months ago by VSM120 • updated 5 months ago by Michael Love19k
1
vote
1
answer
184
views
1
answer
0
votes
1
answer
360
views
1
answer
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