Showing: tximport • reset
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failure importing data with tximport with error information
software error hdf5 tximport written 20 days ago by me5537 • 0 • updated 19 days ago by Michael Love ♦ 26k
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using tximport with STAR transcript-quantification output
deseq2 star tximport written 20 days ago by mohamedrefaat.1.1992 • 0 • updated 20 days ago by Michael Love ♦ 26k
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How to build and map to a "pre-mRNA" reference transcriptome for single nucleus RNA-seq data?
ensembldb tximport single-cell tximeta snrna-seq written 5 weeks ago by shicks • 50 • updated 5 weeks ago by Robert Castelo • 2.3k
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Combining RSEM Files with dif row # for tximport
rnaseq deseq2 tximport written 6 weeks ago by venura • 0 • updated 6 weeks ago by Michael Love ♦ 26k
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IgnoreTxVersion on Tximport not working
salmon tximport written 8 weeks ago by k1mukund • 0
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Normalizing counts using TIN metric before DESeq2
deseq2 salmon tximport written 9 weeks ago by hsbio • 10 • updated 9 weeks ago by Michael Love ♦ 26k
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Silent error in tximport after installing GEOquery
tximport written 10 weeks ago by penny.lane • 0
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RNA-seq with Salmon and tximport
rna-seq salmon tximport written 12 weeks ago by woojoy14 • 0 • updated 12 weeks ago by James W. MacDonald ♦ 51k
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tximport query for un-normalized and TPM data
tximport written 3 months ago by HKS • 0 • updated 3 months ago by Michael Love ♦ 26k
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tximport not working on tsv files
tximport written 3 months ago by HKS • 0
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tximport Error in attr(x, "names") <- as.character(value) : 'names' attribute [2] must be the same length as the vector [1]
rnaseq software error R tximport written 3 months ago by caranlove • 0 • updated 3 months ago by Michael Love ♦ 26k
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windows tximport fail
rhdf5 tximport written 3 months ago by rhart • 0 • updated 3 months ago by Michael Love ♦ 26k
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How to merge two tximport object into one dataset for DESeqDataSetFromTximport
deseq2 tximport written 3 months ago by rensanhao • 0 • updated 3 months ago by Michael Love ♦ 26k
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tximport transcript missing
deseq2 salmon tximport written 3 months ago by mr6518849 • 0
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tximport in DESeq2 problem
tximport written 4 months ago by abskumar • 0 • updated 4 months ago by Michael Love ♦ 26k
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139
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tximport::summarizeToGene fails to ignoreTxVersion
annotationdbi tximport tximeta written 4 months ago by Benjamin • 0
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Data downloaded from GEO has raw transcript count matrix- can I still use tximport? Collapse raw transcript count matrix to GENE LEVEL
tximport collapse written 4 months ago by agm • 0 • updated 4 months ago by Michael Love ♦ 26k
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Get gene level summaries from table of transcript level quantification
deseq2 tximport written 4 months ago by ljmills • 0 • updated 4 months ago by James W. MacDonald ♦ 51k
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tximport from Galaxy output
normalization tximport written 5 months ago by agustin.gonvi • 10 • updated 5 months ago by Michael Love ♦ 26k
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Importing Salmon counts with tximport with host and virus genomes
salmon tximport written 5 months ago by rbenel • 0 • updated 5 months ago by Michael Love ♦ 26k
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tximport discrepancy between TPMs and lengthScaledTPMs
tximport written 5 months ago by igor • 30 • updated 5 months ago by Michael Love ♦ 26k
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inferential replicates in Kallisto when summarising values via tximport
tximport written 5 months ago by Mozart • 10 • updated 5 months ago by Michael Love ♦ 26k
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1
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256
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Importing transcript abundance datasets generated with Salmon 0.14.0
tximport written 5 months ago by edoardobertolini • 0 • updated 5 months ago by Michael Love ♦ 26k
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how to set offset matrix to Deseq2 differential analysis
deseq2 tximport kallisto written 5 months ago by qwzhang0601 • 0 • updated 5 months ago by Michael Love ♦ 26k
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Salmon / tximport
deseq2 tximport written 5 months ago by polaxgr • 10 • updated 5 months ago by Michael Love ♦ 26k
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