0
votes
3
answers
107
views
3
answers
0
votes
1
answer
245
views
1
answer
confusion with tximport options and resulting matrix
rnaseq limma voom tximport rsem written 23 days ago by arubio0 • updated 23 days ago by Gordon Smyth31k
1
vote
1
answer
87
views
1
answer
tximport error with salmon version
deseq2 salmon tximport written 4 weeks ago by agetzler0 • updated 4 weeks ago by Michael Love13k
1
vote
1
answer
88
views
1
answer
0
votes
1
answer
73
views
1
answer
how to deal with the cufflinks files
tximport written 6 weeks ago by xiaoaozqd0 • updated 6 weeks ago by Michael Love13k
1
vote
1
answer
100
views
1
answer
How to get DESeq2 sizefactors from data imported using tximport
deseq2 sailfish tximport written 6 weeks ago by stan0 • updated 6 weeks ago by Michael Love13k
0
votes
1
answer
122
views
1
answer
1
vote
0
answers
151
views
0
answers
0
votes
1
answer
219
views
1
answer
DESeqDataSetFromTximport with kallisto abundances.
deseq2 tximport written 9 weeks ago by bh1290 • updated 9 weeks ago by Michael Love13k
2
votes
1
answer
174
views
1
answer
2
votes
1
answer
134
views
1
answer
0
votes
1
answer
145
views
1
answer
(very) conflicting results with DESeq2 between versions
rnaseq deseq2 R tximport kallisto written 10 weeks ago by birgittenilsson0 • updated 10 weeks ago by Michael Love13k
0
votes
2
answers
386
views
2
answers
1
vote
1
answer
121
views
1
answer
tximport using for data generated from other tools
salmon tximport express written 10 weeks ago by saumya.kumar0 • updated 10 weeks ago by Michael Love13k
0
votes
1
answer
189
views
1
answer
2
votes
1
answer
156
views
1
answer
check splice isoforms
deseq2 tximport written 3 months ago by ry827220 • updated 3 months ago by Michael Love13k
1
vote
1
answer
354
views
1
answer
unable to get tximport to work on data from kallisto
tximport kallisto written 3 months ago by swamyvinny0 • updated 3 months ago by Steve Lianoglou12k
3
votes
1
answer
516
views
1
answer
1
vote
1
answer
246
views
1
answer
2
votes
1
answer
469
views
1
answer
Is there any point to TMM-normalize TPM prior to limma-voom?
edger voom tximport limma-voom written 4 months ago by johnmcma0 • updated 4 months ago by Ryan C. Thompson5.9k
0
votes
1
answer
268
views
1
answer
tximport error reading salmon quantification files...
salmon tximport written 5 months ago by nschurch10 • updated 5 months ago by James W. MacDonald44k
0
votes
1
answer
237
views
1
answer
tximport - using hg38 with RefSeq (NM) and Gene Symbol
salmon hg38 tximport tx2gene.csv written 5 months ago by seb.boegel0 • updated 5 months ago by Michael Love13k
2
votes
1
answer
243
views
1
answer
txImport: a gene seems missing from the sample data
tximport tximportdata written 5 months ago by alexlok0 • updated 5 months ago by Michael Love13k
3
votes
1
answer
306
views
1
answer
8
votes
2
answers
968
views
2
answers
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