Showing: tximportreset
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tximport in DESeq2 problem
tximport written 9 days ago by abskumar0 • updated 9 days ago by Michael Love24k
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tximport from Galaxy output
normalization tximport written 26 days ago by agustin.gonvi10 • updated 26 days ago by Michael Love24k
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Importing Salmon counts with tximport with host and virus genomes
salmon tximport written 28 days ago by rbenel0 • updated 28 days ago by Michael Love24k
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tximport discrepancy between TPMs and lengthScaledTPMs
tximport written 29 days ago by igor20 • updated 28 days ago by Michael Love24k
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inferential replicates in Kallisto when summarising values via tximport
tximport written 4 weeks ago by Mozart10 • updated 4 weeks ago by Michael Love24k
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89
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how to set offset matrix to Deseq2 differential analysis
deseq2 tximport kallisto written 6 weeks ago by qwzhang06010 • updated 6 weeks ago by Michael Love24k
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Salmon / tximport
deseq2 tximport written 6 weeks ago by polaxgr10 • updated 6 weeks ago by Michael Love24k
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Correct use of tximport in combination with edgeR cpm()
edger tximport written 9 weeks ago by ATpoint10 • updated 9 weeks ago by James W. MacDonald50k
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Tximport and pseudo alignment with Kallisto
deseq2 tximport kallisto written 9 weeks ago by Mozart10 • updated 9 weeks ago by Michael Love24k
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62
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Robust FPM with normalization factors (from tximport)?
normalization deseq2 tximport written 10 weeks ago by Roger0 • updated 10 weeks ago by Michael Love24k
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output of the function "makeCountsFromAbundance"
tximport written 11 weeks ago by capricygcapricyg0 • updated 11 weeks ago by James W. MacDonald50k
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118
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tximport, Kallisto and Deseq2 (quick answer)
deseq2 counts tximport kallisto written 11 weeks ago by Mozart10 • updated 11 weeks ago by Michael Love24k
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95
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tximport and txOut
deseq2 tximport written 11 weeks ago by Merlin 10 • updated 11 weeks ago by Michael Love24k
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96
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139
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130
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dtuScaledTPM vs lengthScaledTPM in DTU analysis
salmon tpm tximport dtu rnaseqdtu written 3 months ago by fiona.dick9110 • updated 3 months ago by Michael Love24k
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quant.sf files and tximport, transcripts not recognized
salmon tximport written 3 months ago by Merlin 10 • updated 3 months ago by Michael Love24k
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135
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Salmon (quant.sf) to tximport error
tximport written 3 months ago by Merlin 10 • updated 3 months ago by Michael Love24k
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