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3
votes
1
answer
45
views
1
answer
Correct usage of tximport counts in edgeR without offset matrix.
edger rna-seq tximport written 9 days ago by ttekath • 0 • updated 9 days ago by James W. MacDonald ♦ 48k
0
votes
0
answers
94
views
0
answers
R failing to load genome files from EnsDb.Hsapiens.v86
ensembldb tximport ensdb.hsapiens.v86 written 19 days ago by michaelschoeber • 0
0
votes
1
answer
74
views
1
answer
tximport and its version
stringtie tximport rna-seq analysis written 20 days ago by Mithil Gaikwad • 0 • updated 20 days ago by James W. MacDonald ♦ 48k
0
votes
1
answer
63
views
1
answer
Getting an error trying to do tximportData tutorial
deseq2 tximport written 24 days ago by mogasawara • 0 • updated 24 days ago by Michael Love ♦ 20k
1
vote
1
answer
95
views
1
answer
importing Tximport to DESeq2 for a time series experiment
deseq2 tximport written 24 days ago by ahmedaalkarim • 0 • updated 24 days ago by Michael Love ♦ 20k
2
votes
1
answer
69
views
1
answer
How tximport summerize transcript-level abundance to gene-level
tximport written 28 days ago by lkianmehr • 0 • updated 28 days ago by Michael Love ♦ 20k
1
vote
1
answer
68
views
1
answer
How get genename by tximport
tximport genename written 6 weeks ago by lkianmehr • 0 • updated 6 weeks ago by Michael Love ♦ 20k
1
vote
1
answer
68
views
1
answer
What is the expected location of bootstrap samples relative to quant.sf file ?
salmon tximport tximportdata written 6 weeks ago by fcuy047 • 0
1
vote
1
answer
87
views
1
answer
trouble importing data for DEseq2 workflow
deseq2 tutorial pasilla tximport tximportdata written 8 weeks ago by Stanley Yang • 0 • updated 8 weeks ago by Michael Love ♦ 20k
2
votes
2
answers
121
views
2
answers
tximport and de novo transcriptome
tximport salmon rna seq de novo written 10 weeks ago by RMRG • 10 • updated 10 weeks ago by James W. MacDonald ♦ 48k
1
vote
2
answers
85
views
2
answers
Help with error produced when using makeTxDbFromBiomart
tximport tximport rnaseq written 12 weeks ago by pat20 • 0 • updated 12 weeks ago by James W. MacDonald ♦ 48k
2
votes
2
answers
211
views
2
answers
Get the countsFromAbundance as limma input
limma deseq2 differential expression tximport written 3 months ago by Darklings • 0 • updated 3 months ago by Gordon Smyth ♦ 35k
1
vote
1
answer
149
views
1
answer
tximport using Ensembdb to create Tx2gene dataframe with bovine transcripts ?
bos taurus ensembldb tximport tx2gene written 4 months ago by gilles.charpigny • 0 • updated 4 months ago by James W. MacDonald ♦ 48k
0
votes
1
answer
175
views
1
answer
DESeq2/tximport 'duplicate rownames not allowed' error
deseq2 tximport written 4 months ago by ctl • 0
0
votes
1
answer
251
views
1
answer
tximport allfile.exists(files)--> FALSE
tximport written 4 months ago by gilles.charpigny • 0 • updated 4 months ago by James W. MacDonald ♦ 48k
0
votes
1
answer
117
views
1
answer
tximport latest version on bioconductor and bioconda
tximport written 4 months ago by sebio • 0 • updated 4 months ago by James W. MacDonald ♦ 48k
0
votes
1
answer
82
views
1
answer
Tximport Input file
tximport written 4 months ago by akhilkrishnavs • 0 • updated 4 months ago by Michael Love ♦ 20k
0
votes
1
answer
105
views
1
answer
Using tximport on RSEM abundance date
rnaseq tximport rsem written 5 months ago by raeganlynn123 • 0 • updated 5 months ago by Michael Love ♦ 20k
1
vote
1
answer
151
views
1
answer
DE analysis of orthologs with varying sequence lengths using RSEM+tximport+DEseq2: normalization for sequence length?
deseq2 differential expression tximport rsem sequence length normalization written 5 months ago by al-ash • 20 • updated 5 months ago by Michael Love ♦ 20k
0
votes
1
answer
137
views
1
answer
countsFromAbundance for gene-level RSEM import in tximport
tximport rsem written 5 months ago by celi0001 • 0 • updated 5 months ago by Michael Love ♦ 20k
2
votes
2
answers
194
views
2
answers
Tximport of quasi-alignment-based RNAseq quantification (Salmon) for use with edgeR
rnaseq edger salmon tximport written 6 months ago by martin.weihrauch • 10 • updated 6 months ago by Aaron Lun • 21k
2
votes
2
answers
206
views
2
answers
[DESeq2] Different results from tutorial
deseq2 tximport tximportdata written 6 months ago by changhan1110 • 0 • updated 6 months ago by Michael Love ♦ 20k
0
votes
1
answer
349
views
1
answer
Differences in gene length passed to DESeq2 by tximport reulted in different gene rankings
deseq2 tximport rsem saimon written 6 months ago by LD • 0 • updated 6 months ago by Michael Love ♦ 20k
0
votes
1
answer
211
views
1
answer
Create Ensembl transcript to gene IDs table with R ensembldb package for tximport
salmon ensembldb tximport written 6 months ago by user31888 • 30 • updated 6 months ago by Johannes Rainer • 1.3k
2
votes
2
answers
338
views
2
answers
how to get the lastest version of tximport
stringtie tximport written 9 months ago by matrs • 0
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