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Comment: clusterProfiler merge_result dotplot by jodi.thomas • 0
Did you find a solution for this? I've also run into the exact same problem using merge_result on two gseaResult objects.
Answer: Pipeline for an Anova-like analysis in edgeR by Gordon Smyth 42k
The edgeR QL workflow illustrates a full pipeline: https://www.bioconductor.org/packages/release/workflows/vignettes/RnaSeqGeneEdgeRQL/i…
Comment: unable to forge custom BSgenome after update by Hervé Pagès 14k
From the updated vignette (unrendered): > If the assembly or genome has no circular sequence, set \code{circ\_seqs} to \code{character(0)}…
Comment: Sorting columns in pheatmap by Chris Seidel ▴ 70
If you set `cluster_cols=FALSE`, pheatmap will leave the order of the columns alone, and you can set it any way you like.
Comment: unable to forge custom BSgenome after update by Chris Seidel ▴ 70
I looked at your link for the updated vignette, but I wasn't sure I understood it (unrendered). If there are no circular sequences, we shou…
Votes
A: p-values from robust linear model in LIMMA
Comment: unable to forge custom BSgenome after update
Comment: .onLoad failed in loadNamespace() for 'org.Hs.eg.db'
Answer: Mapping EntrezId to Ensembl IDs returns NA for pseudogenes and snoRNA
Answer: unable to forge custom BSgenome after update
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