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Answer: 3-factor DESeq2 trime-series analysis
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Kevin Blighe
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My sincere apologies that my colleagues had ignored your question.
Yes, a triple interaction term is possible in DESeq2 and makes sense …
Answer: Questions about pseudo counts from RUVSeq
by
Kevin Blighe
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4.0k
My sincere apologies that my colleagues had ignored your question.
Your approach with EDASeq for within- and between-lane normalization …
Answer: Problem with viewGO(ref_path) in SpliceWiz
by
Kevin Blighe
★
4.0k
My sincere apologies that my colleagues had ignored your question.
The error occurs because the Gene Ontology annotations were not gener…
Answer: GOseq Probability Weight Function bad fit
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Kevin Blighe
★
4.0k
My sincere apologies that my colleagues had ignored your question.
The probability weighting function (PWF) in GOseq is fitted using a m…
Answer: [DESeq2] Changing dispersion estimates between runs of DESeq2
by
Kevin Blighe
★
4.0k
The observed switch from parametric to local dispersion fitting in your rerun is a built-in behavior of DESeq2. When the default parametric…
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