Bioconductor ChIpseq

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1.1k

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ChIPpeakAnno ChIPSeq

updated 8 months ago by James W. MacDonald 65k • written 8 months ago by Jerina ▴ 10

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3.1k

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DiffBind chipseq

updated 9 months ago by Rory Stark ★ 5.2k • written 9 months ago by ANAMIKA • 0

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1.0k

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ChIPSeq DiffBind

updated 11 months ago by Rory Stark ★ 5.2k • written 11 months ago by lin.pei26 • 0

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1.8k

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DiffBind R chipseq

updated 4 months ago by Rory Stark ★ 5.2k • written 6.6 years ago by kyliecode • 0

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397

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chipseq DifferentialMethylation DESeq2

updated 3 months ago by Michael Love 41k • written 3 months ago by rebw25 • 0

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119

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chipseq

updated 19 days ago by James W. MacDonald 65k • written 19 days ago by zhulin • 0

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1.2k

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diffbind chipseq

updated 12 months ago by lin.pei26 • 0 • written 4.7 years ago by danielaperry2015 • 0

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452

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DiffBind chipseq

updated 7 months ago by James W. MacDonald 65k • written 7 months ago by lin.pei26 • 0

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DiffBind macs2 chipseq

3 days ago yvonneh • 0

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286

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ChIPpeakAnno ChIPSeq MotifDiscovery

7 months ago franciscrick41 • 0

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333

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csaw ChIPseq DiffBind

5 months ago jared.andrews07 ▴ 30

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169

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ChIPSeq annotation ChIPpeakAnno

12 weeks ago nilanjanamani88 • 0

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176

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bSubControl ChIPSeq DiffBind

3 months ago frueher • 0

13 results • Page 1 of 1

Recent ...

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Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by Chris • 0

Thanks Gordon for the advice! I ran fgsea, gsva and camera(), the most significant pathways are different. For the purpose of finding pathw…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…

Comment: DNAString: Standard checksum function? by Henrik Bengtsson ★ 2.4k

For completeness: SEGUID v2 (https://www.seguid.org/), implemented in CRAN package **[seguid](https://cran.r-project.org/package=seguid)*…

Comment: fgsea significant result by Chris • 0

Thanks ATpoint! Setting a fixed seed can reproduce the same result. However, if someone else analyze the same data with different seed, the…

Comment: SGSeq: moving toward diffex from SGSeq analysis by Sara • 0

Thank you for your response. I have another question about saving the sgvc result as a CSV file. I would appreciate your help, please. ``` …

Votes

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Handling multiple differential expression comparisons

Answer: fgsea significant result

package goseq seems to be not available on the latest version of R

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