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affy mas5
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Affe package mas5 error
affy
affy mas5
6.0 years ago
yuyingxie
• 0
2
votes
6
replies
1.4k
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mas5 normalization gives negative values
affy mas5
updated 8.2 years ago by
James W. MacDonald
65k • written 8.2 years ago by
Angel
▴ 40
0
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8
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1.6k
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mas5calls error question
mas5 affy
mas5
affy mas5
mas5calls
affy
updated 8.5 years ago by
James W. MacDonald
65k • written 8.5 years ago by
suarez.samuel
• 0
8
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16
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3.2k
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matrix transposing in R
affy mas5
updated 8.8 years ago by
arfranco
▴ 130 • written 8.8 years ago by
Angel
▴ 40
4 results • Page
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Comment: Method to find pathways different between 2 groups
by
Gordon Smyth
50k
sigPathway is another method that does not account for inter-gene correlation and gives inflated significance, as we showed in our 2012 pap…
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
by
James W. MacDonald
65k
I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
Answer: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…
Comment: Memory errors using read.bismark?
by
Juan Higareda
• 0
Thanks a lot Peter, We solved the problem, IT had implemented a policy of RAM usage that started a conflict with any RAM-hungry process, m…
Answer: meffil.snp.concordance
by
James W. MacDonald
65k
This support site is meant to help people with technical questions about Bioconductor packages. The `meffil` package is not Bioconductor, n…
Votes
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
Answer: Extremely small p-values using Limma for proteomic data
Answer: How to save the DEXSeq results
Answer: minfi support of illumina Infinium methylationEPIC v2.0
Comment: minfi support of illumina Infinium methylationEPIC v2.0
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