updated 7 days ago by
Mike Smith
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written 7 days ago by
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Comment: Confused about the CPM and TMM normalization in edgeR
by
Mohamed
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0
Sorry for misunderstanding. What I meant was that there is always two option of using cpm on DGElist as shown in my above codes:
Option 1:…
Answer: Number of rows in DESeq2 output (.csv) is not the same as number of rows in the
by
Jamie
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0
I think I found the problem, DESeq2 or R could not deal with 5' and 3' or mentionings of commas in the gene names, so after conversion to '…
Comment: Number of rows in DESeq2 output (.csv) is not the same as number of rows in the
by
Basti
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330
Are you sure you checked the right file ? There is no reason for `as.data.frame(res)` to add lines. please check `library(readr); deseq2res…
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