updated 8.9 years ago by
James W. MacDonald
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written 8.9 years ago by
Vinicius Henrique da Silva
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Comment: How to control batch effect if Group and batch are same?
by
ATpoint
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Spam is strong in here.
Answer: How to control batch effect if Group and batch are same?
by
RasheedDickinson
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0
Batch correction in cases where groups are confounded can be challenging. Considering advanced methods like RUV or sva might help in such s…
Answer: edgeR 4.2.1 compression bug: a minimally reproducible snippet
by
Gordon Smyth
51k
Thanks very much for the reproducible example. The bug has been fixed now in edgeR 4.3.17 on the Bioconductor developmental repository.
Answer: Highly DE genes but small count difference within conditions
by
h1vu81gcd7
•
0
It sounds like you're diving deep into DE analysis, comparing condition1 with the control using a solid design. However, the elevated padj …
Comment: dmpFinder for other objects
by
neyousha
•
0
Hi James,
Thank you a lot for responding. Hmm... so do you think if have matrix average_beta below:
![average_beta_matrix][1]
[1]:…
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