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Answer: Problem related to `biomaRt::getBM()` during `R CMD check` execution
by
James W. MacDonald
60k
Does the section in the biomaRt vignette that talks about caching (and using a temp dir) help?
Comment: OPLS-DA: confidence interval for accuracy metric
by
Eddie
• 0
Worked well under pROC. Thank you
Comment: errors in annotation
by
James W. MacDonald
60k
If you go to NCBI and the data appear to be correct, then they have evidently already fixed the errors you have found. The data we download…
Comment: How should I set my eps value in cluster profiler?
by
Guido Hooiveld
★ 3.3k
Under the hood `clusterProfiler` makes use of a (fast) GSEA algorithm implemented in the package `fgsea` (function `fgseaMultilevel`). The …
Comment: Error using ChAMP SVD analysis
by
CristEin
• 0
In fact, I found that the author may have caused the problem class(myNorm) %>% length() #equals 2 class(myNorm) == "data.…
Votes
How to select summit size for histone ChiP-Seq in Diffbind
Comment: GSEA with Wikipathways not entirely reproducible
Comment: How to get gene length for RPKM directly from DGEList object in latest edgeR?
DiffBind: reading in peaksets generated by Homer2
Using HOMER called peaks in DiffBind
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