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Error to convert a DGEList to DESeqDataSet in DEFormats
DEFormats
DESeq2
edger
7.7 years ago
Akira Imamoto
• 0
0
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1.2k
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simpleRNASeq easyRNAseq warnings edgeR error
simplernaseq
easyrnaseq
edger
DEformats
updated 6.2 years ago by
Nicolas Delhomme
▴ 320 • written 6.3 years ago by
KGies
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Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Sey R.
• 0
Thank you for your response
Comment: Different number of exons in reference genome affects DEXSeq analysis
by
Alejandro Reyes
★ 1.9k
Hi Alessia. Makes sense. Something I use often are the support levels from ENSEMBL and the annotation of principal isoforms. These substant…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Michael Love
41k
Sorry, for questions about statistical analysis plan and interpretation of results, I recommend to work with a local statistician or someon…
Answer: Fold change calculation in Diffbind vs. DESEQ2?
by
Michael Love
41k
There was a recent DiffBind question on the support site that noticed the same thing, try searching recent DiffBind posts.
Answer: Timecourse RNASeq analysis
by
Michael Love
41k
There are many choices for time course, and we have an example in our workflow (rnaseqGene). Otherwise, I recommend to consult a local …
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Comment: Why p value inconsistent when using different number of pathway score?
Nominations for Bioconductor Awards 2024!
Answer: Improving the design matrices vignette in RNAseq123
Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
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