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Comment: calculateQCMetrics defunct, how to calculate the quality metrics by perCellQCMet
Replace `feature_controls` with `subsets`. As said below, type `?calculateQCMetrics` to see the help with avaialble arguments and example c…
Answer: DESeq2 question
This has been posted before on the support site. You can search the site or just click some of the related posts on the right sidebar.
Answer: Multi-factorial Time-based design in DEseq2: defining full and reduced model
For questions about how to formulate particular contrasts in R, I recommend working with a local statistician or someone familiar with line…
Comment: How to get DESeq2 results for a list of genes
¯\\\_(ツ)_/¯ I think it's also important that people know this is a safe space to post. I don't regret stating that.
Comment: ComplexHeatmap - Heatmap function within a for loop
What is `hm_list`? I would not use `ggsave()` to save the heatmaps. Can you directly use: ``` pdf(...) draw(ht). # or print(ht) dev.off() …
Answer: Why Negative value from GSVA
Mapping patient dataset onto control dataset
Comment: DiffBind GreyListChIP error: Error: BiocParallel errors
Answer: Error message: Could not find function "DESeqDataSetFromMatrix"
XVector installation fails because zlib.h is not found
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