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Comment: Problem with fgsea
by
James W. MacDonald
66k
Please don't add questions (as a comment!) to two year old posts. If you have a question, please generate a new post.
Answer: Significant genes in DESeq2 analysis
by
James W. MacDonald
66k
The short answer is that your results are fine. There's no expectation for what proportion of bars in a histogram of the p-values should be…
Comment: Create multiple DoparParams with different number of registered cores
by
James W. MacDonald
66k
OK, my bad. Never used that aspect of the package before.
Comment: Problem with fgsea
by
Tanvi
• 0
A follow up question to this, when using the geneSets from msigdb, Homo sapiens: C2 category, should I filter the gene sets with respect to…
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Just nudging this @rory. Just would like to know if I am correct on this or not thanks.
Votes
A: goana limma- extract list of DE genes and genes in the enriched GO terms?
A: goana limma- extract list of DE genes and genes in the enriched GO terms?
A: Different logFC (log2foldchange) values for genes from limma-voom and other too
Different logFC (log2foldchange) values for genes from limma-voom and other tools (edgeR and DESeq2)
Different logFC (log2foldchange) values for genes from limma-voom and other tools (edgeR and DESeq2)
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