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Comment: Error message: Could not find function "DESeqDataSetFromMatrix" by James W. MacDonald 60k

Install locfit.

Comment: calculateQCMetrics defunct, how to calculate the quality metrics by perCellQCMet by ATpoint ★ 1.3k

Replace `feature_controls` with `subsets`. As said below, type `?calculateQCMetrics` to see the help with avaialble arguments and example c…

Answer: DESeq2 question by Michael Love 37k

This has been posted before on the support site. You can search the site or just click some of the related posts on the right sidebar.

Answer: Multi-factorial Time-based design in DEseq2: defining full and reduced model by Michael Love 37k

For questions about how to formulate particular contrasts in R, I recommend working with a local statistician or someone familiar with line…

Comment: How to get DESeq2 results for a list of genes by Lucía ▴ 10

¯\\\_(ツ)_/¯ I think it's also important that people know this is a safe space to post. I don't regret stating that.

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Answer: Why Negative value from GSVA

Mapping patient dataset onto control dataset

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