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Answer: How to read OSCA book?
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Lluís Revilla Sancho
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730
The OSCA book is hosted by Bioconductor here: [https://bioconductor.org/books/release/OSCA/][1].
You can just use the browser and consult…
Comment: clusterProfiler: BgRatio N value does not match the size of the gene universe th
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Guido Hooiveld
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By using a slightly different way I get much larger numbers; both for the total number of input that could be annotated (= mapped to IDs), …
Answer: Dealing with 0 miRNA counts in DESeq2 analysis and influence in adjusted p-value
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Michael Love
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This is covered in the workflow (rnaseqGene).
You can filter them, but no they will not negatively affect the multiple testing because o…
Comment: When doing differential methylation using the sesame package, seems to only go
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ramiro.barrantes
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Thank you, the strange thing is that I am only getting positive effect sizes. I [see two relevant definitions][1]:
- Eff_* : The effect s…
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