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Question on copy number estimation for Affymetrix SNP array 100k and 500k
SNP
crlmm
genoCN
SNP
crlmm
genoCN
updated 12.4 years ago by
Henrik Bengtsson
★ 2.4k • written 12.4 years ago by
Julie Zhu
★ 4.3k
1 result • Page
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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
Thank you for your help Dr. Michael. One more doubt, my original loci contains 7000 locus on different chromosomes. When i am generating …
Comment: Strand information in a GAlignmentsList object derived from strand-specific pair
by
Robert Castelo
★ 3.0k
As James said, a `GAlignmentsList` object is the container for storing properly-paired, but with ambiguous pairing, alignments, and we're i…
Answer: Doubts about manipulation and annotation of microarray files deposited at GEO
by
James W. MacDonald
62k
Your first question is something that you will have to answer for yourself. There are any number of reasons that an array manufacturer will…
Comment: Splicing analysis with ASpli package gives an error when I use binGenome functio
by
Sophie
• 0
I was having a similar problem using the hg19 genome from UCSC. I tried many different ways of accessing the gtf and txdb object (i.e. down…
Comment: stat_compare_means function - Error 'must have same length'
by
Elif
• 0
Hello Basti, Thanks for suggesting this. I've tried it (I saw that in StackoverFlow I think), but it seems the value of the argument `test…
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Convert SpatialExperiment Object to Seurat Object
Answer: Doubts about manipulation and annotation of microarray files deposited at GEO
Answer: Joining different datasets and analyzing using the group-specific condition effe
Answer: Joining different datasets and analyzing using the group-specific condition effe
A: Subclustering after MNN batch-correction
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