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gsealm
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emacs org mode html export using jQuery DataTables (WAS: new package for generating interactive HTML reports)
Network
limma
GOstats
GSEAlm
edgeR
ReportingTools
Network
limma
GOstats
GSEAlm
edgeR
11.3 years ago
Malcolm Cook
★ 1.6k
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2.3k
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new package for generating interactive HTML reports
Network
limma
GOstats
GSEAlm
edgeR
ReportingTools
Network
limma
GOstats
GSEAlm
edgeR
updated 11.3 years ago by
Malcolm Cook
★ 1.6k • written 11.3 years ago by
Josh Kaminker
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Help with GSEAlm
biomaRt
GSEAlm
biomaRt
GSEAlm
updated 11.8 years ago by
James W. MacDonald
65k • written 11.8 years ago by
b1gorsuch@comcast.net
▴ 20
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question on GSEAlm
GSEAlm
GSEAlm
15.3 years ago
Mark W Kimpel
▴ 830
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2
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1.3k
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confused about J-G statistic of GSEAlm
GO
GSEAlm
GO
GSEAlm
updated 15.5 years ago by
rgentleman
★ 5.5k • written 15.5 years ago by
Mark W Kimpel
▴ 830
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2
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1.2k
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using GSEAlm with GO geneSetCollections
GO
affy
goTools
Category
GSEABase
GSEAlm
GO
affy
goTools
Category
GSEABase
GSEAlm
updated 15.5 years ago by
Dykema, Karl
▴ 90 • written 15.5 years ago by
Mark W Kimpel
▴ 830
0
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0
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661
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Finding genes with significant linear regression, or trend
GSEAlm
GSEAlm
16.0 years ago
Assaf Oron
▴ 40
7 results • Page
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Comment: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
angelathuynh5
• 0
Thank you for your response. To clarify, the process of making a heatmap performs rowscaling so it takes the value - (mean/std). And to res…
Comment: Limma without eBayes, is it indistunguishable from Ordinary Least Square?
by
Gordon Smyth
50k
The formula given in the original question is correct and yours is not. Your formula isn't even constrained to be between 0 and 1. Here is …
Comment: Method to find pathways different between 2 groups
by
Gordon Smyth
50k
sigPathway is another method that does not account for inter-gene correlation and which gives inflated significance, as we showed in our 20…
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
by
James W. MacDonald
65k
I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
Answer: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…
Votes
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
Answer: Extremely small p-values using Limma for proteomic data
Answer: How to save the DEXSeq results
Answer: minfi support of illumina Infinium methylationEPIC v2.0
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