Bioconductor How to install "Bioconductor" package

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how to install "Bioconductor" package

updated 9.5 years ago by babumanish837 ▴ 10 • written 9.5 years ago by zhangyingbo1984 • 0

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Comment: Using tximport for kallisto aligned TOIL data by Nicholas • 0

Great, thanks. I have the transcriptome version and the corresponding GTF file for the ENSEMBL transcriptome version. Is there a way to do …

Answer: affy::rma results doesn't match with ncbi website by James W. MacDonald 68k

Please note that RMA is a method intended to normalize and summarize a set of samples rather than a single sample (it doesn't make much sen…

Comment: Problem installing package TxDb.Mmusculus.UCSC.mm10.knownGene by shepherl 4.1k

Can you try `BiocManager::install("TxDb.Mmusculus.UCSC.mm10.knownGene", type="source")`

Comment: Limma - Complex 2-way multi-level contrast with paired samples by Elizabeth • 0

Thank you very much, James! I wasn't aware of voomLmFit, and using it gave me more logical DEG. I really appreciate your time and effort!

Answer: affy::rma results doesn't match with ncbi website by ATpoint ★ 4.7k

Exact OMCIS reproduction down to the values without code and software version is borderline impossible. Either use the values as provided o…

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