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Comment: How does Deseq2 deal with the row with zero when calculating size factors by ATpoint ★ 3.6k

> Because I found that if there is at least one gene without zero among all of the samples, the deseq2 runs smoothly. No, it doesn't. ``…

Comment: Obtaining rsIDs with ENSG and variant ID information by bd2000 • 0

Thank you for your answer. I've tried to download the package but it didn't work: Error in download.file(url, destfile, method, mode =…

Answer: List of Deprecated Packages for Bioc3.18 by shepherl 3.6k

biomvRCNS has been fixed and is undeprecated

Comment: Ensembl down??? by bas_work ▴ 20

"external_gene_name" is a biomaRt attribute for mouse gene names, equivalent but (obviously) not identical to human HGNC symbols.

Comment: regionCounts() from csaw - object 'fancy_mseq' not found by dineika.chandrananda • 0

Did you get past this error? If so can you summarise what worked?

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Answer: biomaRt not working - lazy table error

Answer: Differential gene expression analysis

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