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Comment: txdb.mmusculus.ucsc.mm10.knowngene issue on X chromosome by bernatgel ▴ 150
James is right, it is using "hg19" if no genome is specified. The other regions probably worked because they are also correct on the human …
Comment: txdb.mmusculus.ucsc.mm10.knowngene issue on X chromosome by remi-xavier.coux • 0
thanks for the reply. plotKaryotype works fine with other mm10 regions, this specific part of X chromosome seems to be the issue.
Comment: ChAMP analysis Error: Meth Matrix and UnMeth Matrix seems not paried correctly A by nereaherrera23 • 0
Hello, I am stuck in the same error (meth and unmeth dont pair correctly), did you solved the issue? Thank you Nerea
Comment: Struggle with the replicates of epic array data by Melisa Tecik • 0
Thanks you so much for the instructions. I also tried M values as you suggested but sadly the result was the same. Apparently, the problem …
Answer: bioconductor packages on bioconda by James W. MacDonald 67k
The bioconda people are responsible for bioconda, so you should ask them if/when they are going to update.
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Answer: bioconductor packages on bioconda
Filtering low variance genes for WGCNA
A: Filtering low variance genes for WGCNA
Answer: Struggle with the replicates of epic array data
Answer: bioconductor packages on bioconda
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