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Comment: Are unequal sample sizes in differential gene expression (DGE) analysis a proble
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Jonathan
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I also tried filtering by another clinical variable, but the problem is that this significantly reduces the sample size of my treatment gro…
Comment: eRNAs count
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ATpoint
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Hi, your question is off-topic here since it does not directly concern a particular Bioconductor package. Maybe posting at biostars.org wil…
Comment: limma technical repeat correction
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john
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Hi @gordonsmyth,
After consulting with the SomaScan team, I've been reflecting on whether limma's assumptions are fully compatible with So…
Comment: Harmonizing Gene Annotations for Meta-Analysis of GSE68183 and GSE80178
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ATpoint
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My recommendation would be to first translate probe identifiers to Ensembl gene IDs, for example with biomaRt, and then take the intersect.…
Comment: [How to construct a model.matrix ]
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kyj2226
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Thanks to you, I learn a lot.
Many thanks,
Yujin.
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