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Comment: Is there a way to run Diffbind without the normalization ?
by
Ginny
• 0
Dear author, I have a similar question. dba.plotMA could easily generate ma plots under raw counts (bNormalized = F), but there is no way …
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James W. MacDonald
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If you want to do a splicing analysis, you cannot have counts/gene because the counts are aggregated at the gene level, not the transcript …
Answer: Group-specific condition effects with individuals nested: matrix is not full ra
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James W. MacDonald
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Yes to both questions.
Answer: TheProcess got Killed
by
James W. MacDonald
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'The process got killed' doesn't provide much information. That could be due to more than one thing. But the simplest explanation is that y…
Answer: Vertical line at A=0, nothing else, on MA plot
by
melissa
• 0
Thank you so much @mikelove ! I was searching for a solution for hours. You made a PhD student very happy. Greetings
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Answer: Group-specific condition effects with individuals nested: matrix is not full ra
Answer: Group-specific condition effects with individuals nested: matrix is not full ra
C: Vertical line at A=0, nothing else, on MA plot
Answer: SingleCellExperiment convenience function for metadata+expression?
Answer: SingleCellExperiment convenience function for metadata+expression?
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