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Answer: How to extract coordinates of mismatches from a BAM file lodaded in as a GAlignm
by
Hervé Pagès
16k
This should be fast:
```r
library(GenomicAlignments)
extractMismatchesFromGAlignments <- function(ga)
{
stopifnot(is(ga, "GAlign…
Answer: GAlignments Cigar to GRanges
by
Hervé Pagès
16k
```r
> as(gal, "GRangesList")
GRangesList object of length 2:
[[1]]
GRanges object with 2 ranges and 0 metadata columns:
seqnames …
Comment: DESEq2 comparison with mulitple cell types under 2 conditions
by
boczniak767
▴
740
Dear @mikelove ,
this method is very appealing but does it avoid making not meaningful comparisons like "1KO" vs "2WT" (using example fro…
Comment: AnnotationHub/ExperimentHub resources backup
by
James W. MacDonald
68k
You can always grab things from the cache if you want to save or share, but that's not part of the paradigm, so there aren't direct facilit…
Comment: AnnotationHub/ExperimentHub resources backup
by
igor
▴
50
Yes, it is cached on your machine, but it wouldn't be cached for your colleagues or for your future self on a different machine.
I agree t…
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RobKo
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Gordon Smyth
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