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phenoTest
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[phenoTest package]: gsea.kegg error with absVals parameter
Pathways
GO
hgu133a
hgu95av2
phenoTest
Pathways
GO
hgu133a
hgu95av2
phenoTest
10.1 years ago
Kostas Kerkentzes
▴ 10
0
votes
1
reply
1.2k
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cox PH model - KM curve
Survival
phenoTest
Survival
phenoTest
updated 12.9 years ago by
Heidi Dvinge
★ 2.0k • written 12.9 years ago by
Adrian Johnson
▴ 330
1
vote
0
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1.1k
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Bug in 'gsea' function ('phenoTest' package)
phenoTest
6.7 years ago
Damien Croteau-Chonka
▴ 10
0
votes
2
replies
1.1k
views
phenoTest and variable-wise multiple testing
phenoTest
phenoTest
updated 11.3 years ago by
James W. MacDonald
65k • written 11.3 years ago by
Jon Manning
▴ 90
0
votes
0
replies
211
views
R/sql code to find the haplotype data from patient's rsIDs
starallele
phenoTest
updated 6 months ago by
James W. MacDonald
65k • written 6 months ago by
greeshmathulasi1
• 0
5 results • Page
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Answer: Numerical differences in DESeq2 output depending on different design matrix cons
by
Michael Love
42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs
by
Michael Love
42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs
by
shaunpeterson
• 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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