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Comment: pathview error "negative length vectors are not allowed
by
Guido Hooiveld
★ 3.7k
Post 2; with some example code + graphs to illustrate the points raised above. > ## Fold change matrix with gene ID as row names. …
Comment: pathview error "negative length vectors are not allowed
by
Guido Hooiveld
★ 3.7k
You have raised an intriguing problem. I believe this is an issue specific for this pathway (i.e. 'Carbon metabolism'), but maybe also for …
Comment: Error MakeOrgPackagefromNCBI
by
James W. MacDonald
63k
It might be due to either the spaces in your path, or the fact that it's a OneDrive directory. It's normally better to just use the Desktop…
Comment: Error MakeOrgPackagefromNCBI
by
cinzia.spagnoli
• 0
I tried, but it does not seem to work. ``` > library(AnnotationForge) > makeOrgPackageFromNCBI(version = "0.1", + …
Answer: how to extract specific gene coordinates by passing a list of genes using homo
by
James W. MacDonald
63k
``` > subset(transcripts(Homo.sapiens, columns = "SYMBOL"), SYMBOL == "BRCA2") 'select()' returned 1:1 mapping between keys and columns …
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Comment: Speeding up of DelayedArray::write_block()
Comment: Speeding up of DelayedArray::write_block()
Unclear of calculating correlations with case+control samples together
Answer: Error MakeOrgPackagefromNCBI
Batch Effect in DESeq2, how to control, how to remove it, how to address biological question
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