updated 10.6 years ago by
Steve Lianoglou
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written 10.6 years ago by
Jake
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Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink
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victor04052024
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The information is interesting, and your writing is excellent. I will provide you a link to my website [Baseball bros](https://baseball-gam…
Comment: segfault in edgeR glmQLFit
by
Gordon Smyth
53k
We have committed a bug fix now to edgeR on both the release and developmental Bioconductor repositories.
Answer: Ensembl site unresponsive via biomaRt
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horaortiz8
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I appreciate the link. I'll get in touch with them directly; I wish they had a status page of some kind. https://www.ensembl.org/Help/Cont…
Comment: segfault in edgeR glmQLFit
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Mark
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Thanks! We had been considering some of these adjustments as well, given the small number of features and total reads. Your advice is well-…
Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink
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ATpoint
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5.0k
> and I first used the normalized counts
You would not use these normalized counts for PCA as they're not on log2 scale. As such, the feat…
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