updated 20 months ago by
shepherl
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written 21 months ago by
Jashvant Kumar
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Comment: p-adjusted values in multiple comparisons
by
Gordon Smyth
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plotMDS() is best run on the original DGEList object, i.e., on the input to voom rather than on the output. See the example analyses in the…
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rajilrfaze
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Comment: p-adjusted values in multiple comparisons
by
ocanorocabayera
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0
Thank you Gordon for your thorough reply. It seems when MDS-plotting the obtained object from 'voom', that the points do not cluster togeth…
Comment: Are voomByGroup and voomLmFit compatible?
by
Gordon Smyth
52k
Not sure what "points" you are referring to, or what you mean by them being "weighted".
Answer: p-adjusted values in multiple comparisons
by
Gordon Smyth
52k
If your data was completely random, with no truly differentially expressed (DE) genes, then you would expect to get nearly 5% of the p-valu…
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