updated 4 months ago by
James W. MacDonald
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written 4 months ago by
starsareintherose
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Answer: Cannot Install WGCNA
by
shepherl
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If you first install preprocessCore and then try again?
`BiocManager::install("preprocessCore")`
`BiocManager::install("WGCNA")`
…
Answer: Why Negative value from GSVA
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Robert Castelo
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hi, i guess when you say that you are using "RNA-Seq Row Count data" you mean "RNA-Seq raw count data" in the sense that the count data is …
Comment: Low Differentially Bound Sites found with DiffBind
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gannoncottone
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I will look into plots of the data more thoroughly and see if any of the trends fit the reasons for low differential binding sites! Thank y…
Answer: Low Differentially Bound Sites found with DiffBind
by
Rory Stark
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4.4k
The script looks fine for a basic analysis.
There are a number of *possible* reasons you may not be getting any significantly differenti…
Answer: Diffbind analysis of ATAC-seq data
by
Rory Stark
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4.4k
This is showing that all of the open chromatin changes are in the same "direction": sites that are open in the `aa` condition only. There a…
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