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Answer: How to annotate a limma Elist raw class object with an annotation file
by
James W. MacDonald
67k
Your first step when trying to use a function is to read the help page (`?mapIds`), which will bring this up: ``` Usage: colu…
Comment: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data
by
Adam
▴ 10
Hi Aaron, You are right. I checked the structure and it is "TENxMatrix" (HDF5-based sparse matrix ). I tried to convert it to SparseArray,…
Comment: pathview - multiple states
by
Philippine
• 0
:D Thank you!!! It works perfectly.
Answer: lfcShrink and alpha value
by
Michael Love
43k
The code I sent just tells summary what threshold to use when printing the table.
Comment: Crossover design with limma
by
Marek Gierlinski
▴ 30
Thank you for your answer. It is an interesting solution. I've never though of modifying the design matrix itself - I always try to have a …
Votes
scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data
Comment: pathview - multiple states
Answer: Crossover design with limma
Answer: Crossover design with limma
Answer: Different PCA results when using rlog and vst transformations
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