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Comment: How to control batch effect if Group and batch are same? by ATpoint ★ 4.5k
Spam is strong in here.
Answer: How to control batch effect if Group and batch are same? by RasheedDickinson • 0
Batch correction in cases where groups are confounded can be challenging. Considering advanced methods like RUV or sva might help in such s…
Answer: edgeR 4.2.1 compression bug: a minimally reproducible snippet by Gordon Smyth 51k
Thanks very much for the reproducible example. The bug has been fixed now in edgeR 4.3.17 on the Bioconductor developmental repository.
Answer: Highly DE genes but small count difference within conditions by h1vu81gcd7 • 0
It sounds like you're diving deep into DE analysis, comparing condition1 with the control using a solid design. However, the elevated padj …
Comment: dmpFinder for other objects by neyousha • 0
Hi James, Thank you a lot for responding. Hmm... so do you think if have matrix average_beta below: ![average_beta_matrix][1] [1]:…
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Answer: edgeR 4.2.1 compression bug: a minimally reproducible snippet
Trying to use enrichGO
Answer: edgeR 4.2.1 compression bug: a minimally reproducible snippet
Answer: dmpFinder for other objects
GSVA ssGSEA vs. Broad implementation of ssGSEA
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