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scMET: Bayesian modelling of DNA methylation heterogeneity at single-cell resolution
scMET
2.7 years ago
kapouranis.andreas
▴ 10
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Comment: Can we get beta values with DMRcate package
by
Melisa Tecik
• 0
Thank you so much for the detailed explanation. I have loaded the package and already used dmrcate and extractRanges functions. I had no …
Comment: DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMe
by
fjrsa
• 0
I would say baseMean, read counts, L2FC, ... are very similar between the two experiments - that's why I was wondering about the results. …
Comment: DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMe
by
ATpoint
★ 4.6k
As said, literally identical on a continuous scale but different in categorical terms.
Comment: DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMe
by
fjrsa
• 0
![enter image description here][1] [1]: /media/images/3d53e4b4-f561-41ee-a5d8-6c3c93e7
Answer: Advice needed: Using limma for differential pathway analysis with continuous dis
by
Gordon Smyth
52k
limma has always handled any combination of continuous or categorical variables from the very beginning. You simply add continuous variable…
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Answer: RSubread output significantly different from bash Subread output
Answer: RSubread output significantly different from bash Subread output
Answer: RSubread output significantly different from bash Subread output
Comment: What type of counts data to import for performing Isoform analysis in edgeR
Answer: Running multiple KNN queries in parallel
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