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Comment: SeSAMe DMR for EPIC V2
by
zhouwanding
▴ 10
Update: The new 1.23.8 should have fixed this issue. Let me know if it still doesn't.
Comment: modelGeneVarByPoisson error selecting bandwidth automatically
by
Lluís Revilla Sancho
▴ 730
Yes, the examples run fine. I only get some warnings (I activated that check in my environment): ``` Warning messages: 1: In seq.default(f…
Comment: EnsDb: bad_weak_ptr
by
Lluís Revilla Sancho
▴ 730
I suspected this. Thanks for the answer, that solution might work! And at least now I understand why this happens (but I wish there would b…
Comment: Research Project - Expanding search funtionality on the GEO database
by
ATpoint
★ 4.2k
Note that GEOquery is inherently limited to array data, are you aware of that? Generally, the problem is with such plans that it would requ…
Answer: Why does DESeq2 give negative log2 fold change in treatment vs control for some
by
Michael Love
42k
If you have other covariates, you can't compare the counts directly. The batch and score influence the expected counts.
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A: DESeq2: Is it necessary to include all terms and interactions in LRT tests?
A: Unable to download "BSgenome.Hsapiens.UCSC.hg19" package using R 3.6.3 on Window
Unable to download "BSgenome.Hsapiens.UCSC.hg19" package using R 3.6.3 on Windows 10 x64
Comment: EnsDb: bad_weak_ptr
DEXSeq errors "Error in scan( line ... did not have 3 elements" and "Error in FUN(X[[i]], ...) : subscript out of bounds" (DEXSeqDataSetFromHTSeq)
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