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Comment: ashr vs apeglm for interaction data
by
Ali Barry
▴
30
Hi Michael,
Plots attached. Many of the large fold changes with `ashr` are driven by one sample per group, but a few are maybe a bit more …
Comment: regression analysis for epic array methylation data using limma
by
nabiyogesh
▴
10
Thanks!
I have tried this; I am not sure after that how to find logeGFR associated probe? and also, how to filter significant probe?
…
Answer: regression analysis for epic array methylation data using limma
by
Basti
▴
280
Which package do you intend to use ? There are many tutorials in packages vignette that show you how to perform differential methylation an…
Comment: scRNASeq reference at a transcript level
by
Basti
▴
280
I believe this question is not related to any Bioconductor package, I think the only solution to this question is to search yourself in Pub…
Comment: Warnings when using "ashr" in lfcshrinkage for DESeq2
by
andrebolerbarros
▴
10
Upgrading the package solved the issue, thanks!
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