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edgeR FC calculation question
updated 10.3 years ago by ★ 7.9k • written 10.3 years ago by ★ 1.3k
0
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2
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1.7k
views
DESeq Fold-Change calculation
DESeq DESeq
updated 11.7 years ago by ★ 3.7k • written 11.7 years ago by ★ 1.3k
0
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3
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941
views
DESeq variance stabilization
RNASeq RNASeq
updated 11.7 years ago by ★ 13k • written 11.7 years ago by ★ 1.3k
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1
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1.8k
views
edgeR for miRNA
edgeR edgeR
updated 12.5 years ago by ▴ 880 • written 12.5 years ago by ★ 1.3k
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0
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838
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RNA-Seq: lognormal, Neg Bin, Poisson distribution
12.5 years ago Lana Schaffer ★ 1.3k
0
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5
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1.3k
views
uneven counts for edgeR
edgeR edgeR
updated 12.5 years ago by 50k • written 12.5 years ago by ★ 1.3k
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0
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1.1k
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PCR bias in RNA-Seq
12.5 years ago Lana Schaffer ★ 1.3k
0
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1
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1.3k
views
RNA-Seq : comparison cuffdiff, edgeR, Partek
edgeR edgeR
updated 12.6 years ago by ▴ 80 • written 12.6 years ago by ★ 1.3k
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2
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2.5k
views
EdgeR- equal number of columns per group?
updated 12.9 years ago by ▴ 260 • written 12.9 years ago by ★ 1.3k
0
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2
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1.1k
views
raw counts for edgeR
Coverage Coverage
updated 13.0 years ago by 21k • written 13.0 years ago by ★ 1.3k
0
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1
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904
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RNA-Seq/edgeR reproducability between lanes
Normalization Normalization
updated 13.0 years ago by ★ 1.1k • written 13.0 years ago by ★ 1.3k
0
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7
replies
1.8k
views
calcNormFactors - normalization
Normalization Normalization
updated 13.0 years ago by ▴ 260 • written 13.0 years ago by ★ 1.3k
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4
replies
1.4k
views
FC calculation in Limma
updated 13.3 years ago by ★ 6.5k • written 13.3 years ago by ★ 1.3k
1
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7
replies
1.5k
views
Limma -time course - no replicates
limma limma
updated 13.9 years ago by ★ 6.0k • written 13.9 years ago by ★ 1.3k
0
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7
replies
1.4k
views
Affy miRNA
miRNA affy miRNA affy
updated 14.6 years ago by ▴ 580 • written 14.6 years ago by ★ 1.3k
0
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3
replies
1.1k
views
Simpleaffy QC
affy affy
updated 14.9 years ago by ▴ 400 • written 14.9 years ago by ★ 1.3k
0
votes
1
reply
709
views
filtered Exon Arrays: Core vs Extended Dataset
limma limma
updated 15.0 years ago by ★ 1.1k • written 15.0 years ago by ★ 1.3k
0
votes
1
reply
675
views
shortReads
updated 15.2 years ago by 25k • written 15.2 years ago by ★ 1.3k
0
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8
replies
1.5k
views
memory exhausted for readAligned
Alignment Alignment
updated 15.2 years ago by 25k • written 15.2 years ago by ★ 1.3k
0
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0
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600
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Tinn-R
15.2 years ago Lana Schaffer ★ 1.3k
0
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0
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673
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Illumina Chip-Seq software
15.3 years ago Lana Schaffer ★ 1.3k
0
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5
replies
1.2k
views
installing xps
xps xps
updated 15.4 years ago by ★ 3.9k • written 15.4 years ago by ★ 1.3k
0
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0
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627
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Illumina Detection Pvalues
15.6 years ago Lana Schaffer ★ 1.3k
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0
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600
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Category for Illumina transcripts
Category Category
15.6 years ago Lana Schaffer ★ 1.3k
0
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4
replies
1.0k
views
filtering Illumina data
updated 15.7 years ago by ★ 3.6k • written 15.7 years ago by ★ 1.3k
0
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0
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660
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combining samples before normalization
Normalization moe430a probe Normalization moe430a probe
15.8 years ago Lana Schaffer ★ 1.3k
0
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2
replies
1.4k
views
the function subset inside a function
15.8 years ago Lana Schaffer ★ 1.3k
0
votes
3
replies
857
views
error retrieving normalized probe values from "pm" array
probe probe
15.8 years ago Lana Schaffer ★ 1.3k
0
votes
0
replies
611
views
correlation method in genefinder
16.0 years ago Lana Schaffer ★ 1.3k
0
votes
0
replies
661
views
Normalization of single color Agilent Arrays
16.0 years ago Lana Schaffer ★ 1.3k
0
votes
1
reply
815
views
Genefinder method
updated 16.0 years ago by 65k • written 16.0 years ago by ★ 1.3k
0
votes
1
reply
2.1k
views
GC-content of biostring
updated 16.1 years ago by 21k • written 16.1 years ago by ★ 1.3k
0
votes
1
reply
594
views
normalized probes
Normalization probe Normalization probe
updated 16.2 years ago by 65k • written 16.2 years ago by ★ 1.3k
0
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4
replies
894
views
probe file for custom array
probe probe
updated 16.2 years ago by 65k • written 16.2 years ago by ★ 1.3k
0
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1
reply
937
views
Custom Array GC bins
updated 16.2 years ago by ▴ 190 • written 16.2 years ago by ★ 1.3k
0
votes
4
replies
842
views
FDR/adj.Pvalues
updated 16.3 years ago by ▴ 50 • written 16.3 years ago by ★ 1.3k
0
votes
4
replies
1.2k
views
matching expression profiles
updated 16.3 years ago by 65k • written 16.3 years ago by ★ 1.3k
0
votes
6
replies
1.5k
views
analysis of 70 groups for differential expression
limma limma
updated 16.6 years ago by 50k • written 16.6 years ago by ★ 1.3k
0
votes
1
reply
713
views
Limma/Time Course Experiments
updated 16.6 years ago by ★ 1.1k • written 16.6 years ago by ★ 1.3k
0
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6
replies
1.2k
views
mas5calls with make.cdf.env
cdf probe makecdfenv cdf probe makecdfenv
updated 16.9 years ago by 65k • written 16.9 years ago by ★ 1.3k
0
votes
2
replies
504
views
Aliases for gene names
updated 17.1 years ago by ▴ 580 • written 17.1 years ago by ★ 1.3k
0
votes
3
replies
252
views
plotHist and plotDeg?
17.1 years ago Lana Schaffer ★ 1.3k
0
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1
reply
195
views
Category
updated 17.1 years ago by ★ 5.5k • written 17.1 years ago by ★ 1.3k
0
votes
1
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174
views
Catagories
updated 17.2 years ago by ★ 7.4k • written 17.2 years ago by ★ 1.3k
0
votes
4
replies
653
views
tiling array normalization
17.3 years ago Lana Schaffer ★ 1.3k
0
votes
1
reply
487
views
Normallization for focused chips
updated 17.3 years ago by ▴ 80 • written 17.3 years ago by ★ 1.3k
0
votes
2
replies
244
views
make.cdf.package
17.3 years ago Lana Schaffer ★ 1.3k
0
votes
2
replies
299
views
Quality Assessment
17.3 years ago Lana Schaffer ★ 1.3k
0
votes
1
reply
261
views
data set validation
updated 17.3 years ago by ▴ 10 • written 17.3 years ago by ★ 1.3k
0
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9
replies
797
views
.Rnw file
17.3 years ago Lana Schaffer ★ 1.3k
80 results • Page 1 of 2
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