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Answer: Answer: Missing transcript
3.0 years ago ATpoint ★ 5.0k
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Comment: Comment: Could not find XtraSNPlocs.Hsapiens.dbSNP155.GRCh37/GRCh38 packages
3.0 years ago ATpoint ★ 5.0k
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Answer: Answer: Using the standard deviation of DESeq rlog transformed counts to identify genes
3.0 years ago ATpoint ★ 5.0k
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Answer: Answer: mmc57bl6nj_gene_ensembl biomaRt
3.0 years ago ATpoint ★ 5.0k
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Comment: Comment: How to search a .narrowPeak file for a list of specific genes using GenomicRange
3.0 years ago ATpoint ★ 5.0k
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Answer: Answer: DEseq2 for time series analysis of data that are already notmalized
3.0 years ago ATpoint ★ 5.0k
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Comment: Comment: Celfiles not reading in
3.0 years ago ATpoint ★ 5.0k
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9.5k
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Comment: Comment: Manually calculating log2 fold change values from DESeq2 normalized counts
3.0 years ago ATpoint ★ 5.0k
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Comment: Comment: Warnings when using "ashr" in lfcshrinkage for DESeq2
3.0 years ago ATpoint ★ 5.0k
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Answer: Answer: suggest to report differential count estimate in DESeq2
3.0 years ago ATpoint ★ 5.0k
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Comment: Comment: low counts from microRNA seq
3.0 years ago ATpoint ★ 5.0k
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Comment: Comment: low counts from microRNA seq
3.0 years ago ATpoint ★ 5.0k
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1.8k
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Answer: Answer: low counts from microRNA seq
3.0 years ago ATpoint ★ 5.0k
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Comment: Comment: I need help with EdgeR!
3.0 years ago ATpoint ★ 5.0k
2
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limma: R-squared for time-series data
limma
updated 3.0 years ago by 53k • written 3.0 years ago by ★ 5.0k
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Answer: Answer: Using DESeq2 for time-series analysis with two conditions
3.0 years ago ATpoint ★ 5.0k
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Comment: Comment: Unusual MA and volcano plots?
3.0 years ago ATpoint ★ 5.0k
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Answer: Answer: Unusual MA and volcano plots?
3.0 years ago ATpoint ★ 5.0k
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Comment: Comment: Results analysis of differential gene expression using DESeq2 package
3.0 years ago ATpoint ★ 5.0k
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Answer: Answer: Does the knock down cause transcriptome-wide differences in isoform usage for Pa
3.1 years ago ATpoint ★ 5.0k
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Comment: Comment: TCGA RNAseq Normalization
3.1 years ago ATpoint ★ 5.0k
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Comment: Comment: Deseq2 and co-expression network normalization
3.1 years ago ATpoint ★ 5.0k
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Answer: Answer: unable to load edgeR after installing it
3.1 years ago ATpoint ★ 5.0k
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1.5k
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Answer: Answer: Changing the sample order in the PCA plot
3.1 years ago ATpoint ★ 5.0k
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1
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1.2k
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Comment: Comment: Older source of biocFileCache package
3.1 years ago ATpoint ★ 5.0k
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1.7k
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Answer: Answer: Problem with DESeq2
3.1 years ago ATpoint ★ 5.0k
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Comment: Comment: Is it possible to convert "DESeq2's normalized counts" to "DEGs"?
3.1 years ago ATpoint ★ 5.0k
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3.7k
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Answer: Answer: Is it possible to convert "DESeq2's normalized counts" to "DEGs"?
3.1 years ago ATpoint ★ 5.0k
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0
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Comment: Comment: Instaling glmGamPoi
3.1 years ago ATpoint ★ 5.0k
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2.2k
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Comment: Comment: Too many differentially expressed miRNA with limma
3.1 years ago ATpoint ★ 5.0k
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1
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1.6k
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Answer: Answer: ChIP-Seq Analysis: Comparing Unannotated Peaks with DESeq2
3.1 years ago ATpoint ★ 5.0k
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0
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1.7k
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Comment: Comment: Error loading package MSnbase on MacOS
3.1 years ago ATpoint ★ 5.0k
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0
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4.9k
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Comment: Comment: Error with DESeq2: DESeqDataSet(se, design = design, ignoreRank) : counts ma
3.1 years ago ATpoint ★ 5.0k
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Answer: Answer: Trouble with importing transcript counts with Salmon
3.1 years ago ATpoint ★ 5.0k
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1
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4.9k
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Comment: Comment: Error with DESeq2: DESeqDataSet(se, design = design, ignoreRank) : counts ma
3.1 years ago ATpoint ★ 5.0k
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4.9k
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Answer: Answer: Error with DESeq2: DESeqDataSet(se, design = design, ignoreRank) : counts ma
3.1 years ago ATpoint ★ 5.0k
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0
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1.3k
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Comment: Comment: SingleR using TPM in a bulk RNA seq dataset
3.1 years ago ATpoint ★ 5.0k
2
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1
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9.7k
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Comment: Comment: Install DESeq2 problem for macbook pro M1 Max
3.1 years ago ATpoint ★ 5.0k
1
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1
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2.5k
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Comment: Comment: why there are read counts in the gene knock out rat RNA-seq data
3.1 years ago ATpoint ★ 5.0k
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1
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2.6k
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Comment: Comment: How to extract all comparison in DESeq2 LRT test
3.1 years ago ATpoint ★ 5.0k
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1
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2.6k
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Comment: Comment: How to extract all comparison in DESeq2 LRT test
3.1 years ago ATpoint ★ 5.0k
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1.3k
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Answer: Answer: Limit the number of nodes in DESeq2
3.1 years ago ATpoint ★ 5.0k
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2.3k
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Comment: Comment: HOMER error: Where is the file?
3.1 years ago ATpoint ★ 5.0k
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959
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Comment: Comment: limma manual typo
3.1 years ago ATpoint ★ 5.0k
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2.5k
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Answer: Answer: Differential Expression Analysis on RNAseq - RSEM expected_count from UCSC RNA-S
3.2 years ago ATpoint ★ 5.0k
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3.8k
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Comment: Comment: t.test to determine the P-value in DESeq2
3.2 years ago ATpoint ★ 5.0k
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0
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1.2k
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Answer: Answer: What should I do with RNA-Seq data to get a gene that work?
3.2 years ago ATpoint ★ 5.0k
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1
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3.8k
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Comment: Comment: t.test to determine the P-value in DESeq2
3.2 years ago ATpoint ★ 5.0k
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1
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1.2k
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Comment: Comment: What should I do with RNA-Seq data to get a gene that work?
3.2 years ago ATpoint ★ 5.0k
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1.5k
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Comment: Comment: Design formula with batch effects DESeq2 "Not full rank matrix" error.
3.2 years ago ATpoint ★ 5.0k
1,102 results • Page 14 of 23
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