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Comment: Comment: How to get DESeq2 results in large count matix files?
4.0 years ago ATpoint ★ 5.0k
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Comment: Comment: Install DESeq2 problem for macbook pro M1 Max
4.0 years ago ATpoint ★ 5.0k
2
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Answer: Answer: fgsea not downloading due to new r version. Is there a way around this?
4.0 years ago ATpoint ★ 5.0k
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Comment: Comment: Large DE LogFC range
4.0 years ago ATpoint ★ 5.0k
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Answer: Answer: airway package not compatible with R version 4.1.2 (2021-11-01)
4.0 years ago ATpoint ★ 5.0k
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Comment: Comment: trackviewer gi2track not found
4.0 years ago ATpoint ★ 5.0k
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Comment: Comment: How to remove batch effect from RNA-seq without count data?
4.0 years ago ATpoint ★ 5.0k
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Comment: Comment: DESeq2 median of ratios normalization for signature score calculation
4.0 years ago ATpoint ★ 5.0k
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Comment: Comment: Help with droplevels in Deseq2
4.0 years ago ATpoint ★ 5.0k
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722
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Comment: Comment: Help with installing Biocmanager
4.0 years ago ATpoint ★ 5.0k
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Comment: Comment: DESeq2 analysis for targeted RNA-seq
4.0 years ago ATpoint ★ 5.0k
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Answer: Answer: Help with droplevels in Deseq2
4.0 years ago ATpoint ★ 5.0k
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Comment: Comment: Start to End RNA-Seq with R Bioconductor
4.0 years ago ATpoint ★ 5.0k
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Answer: Answer: Ensembl dataset version
4.0 years ago ATpoint ★ 5.0k
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Comment: Comment: RNAseq using galaxy
4.0 years ago ATpoint ★ 5.0k
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Answer: Answer: "Paired-end reads were detected in single-end read library"
4.1 years ago ATpoint ★ 5.0k
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Comment: Comment: Can't convert dog ensembl IDs into gene names
4.1 years ago ATpoint ★ 5.0k
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1.8k
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Comment: Comment: velociraptor preparation
4.1 years ago ATpoint ★ 5.0k
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Comment: Comment: deseq2 machine sizing best practices for very large data set
4.1 years ago ATpoint ★ 5.0k
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1.8k
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Comment: Comment: seqinfo got changed after `library(rtracklayer)`
4.1 years ago ATpoint ★ 5.0k
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Comment: Comment: Error with hclust
4.1 years ago ATpoint ★ 5.0k
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Answer: Answer: Error with hclust
4.1 years ago ATpoint ★ 5.0k
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Comment: Comment: deseq2 datasetfrommatrix
4.1 years ago ATpoint ★ 5.0k
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Comment: Comment: Suppress messages from ALL calls to load package
4.1 years ago ATpoint ★ 5.0k
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Comment: Comment: normalizing EXOM-seq read using DESeq2
4.1 years ago ATpoint ★ 5.0k
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Answer: Answer: normalizing EXOM-seq read using DESeq2
4.2 years ago ATpoint ★ 5.0k
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biomaRt connection error
biomaRt
updated 4.2 years ago by ★ 6.6k • written 4.2 years ago by ★ 5.0k
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Answer: Answer: WGCA tutorial related question
4.3 years ago ATpoint ★ 5.0k
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Answer: Answer: Deseq2 and log2foldchange cutoffs- How to get differentially expressed genes?
4.3 years ago ATpoint ★ 5.0k
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Answer: Answer: DESeq2 differential expression analysis of protein coding genes only
4.3 years ago ATpoint ★ 5.0k
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Comment: Comment: spearman correlation
4.3 years ago ATpoint ★ 5.0k
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Answer: Answer: DESeq2 (version 1.10 vs 1.30)
4.3 years ago ATpoint ★ 5.0k
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Answer: Answer: Can VST be run without runing DESeq or estimateSizeFactors
4.3 years ago ATpoint ★ 5.0k
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Answer: Answer: How similar or disimilar are two sets of DEG?
4.3 years ago ATpoint ★ 5.0k
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2.5k
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Comment: Comment: deseq2 machine sizing best practices for very large data set
4.3 years ago ATpoint ★ 5.0k
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2.5k
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Comment: Comment: deseq2 machine sizing best practices for very large data set
4.3 years ago ATpoint ★ 5.0k
1
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1
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3.6k
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Answer: Answer: "full model matrix is less than full rank"
4.3 years ago ATpoint ★ 5.0k
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1.9k
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Comment: Comment: error: cannot execute 'f951': execvp: No such file or directory when downloading
4.3 years ago ATpoint ★ 5.0k
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Answer: Answer: Effect size using likelihood ratio test in DESeq2
4.3 years ago ATpoint ★ 5.0k
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Comment: Comment: limma/voom for protein intensity data
4.4 years ago ATpoint ★ 5.0k
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Comment: Comment: small dimensions in the matrix of counts from smallRNA using DESEq2
4.4 years ago ATpoint ★ 5.0k
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Comment: Comment: Sequencing depth before and aftr normalisation with DESEQ2 doesn't look as expec
4.4 years ago ATpoint ★ 5.0k
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1.8k
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Answer: Answer: DESeq2 design for paired samples
4.4 years ago ATpoint ★ 5.0k
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Comment: Comment: LIMMA - for Microarrays?
4.4 years ago ATpoint ★ 5.0k
2
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Answer: Answer: DESeq2: LRT or WALD guidance
4.4 years ago ATpoint ★ 5.0k
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Comment: Comment: DESEQ2 log2FC is not following Normalized read count
4.4 years ago ATpoint ★ 5.0k
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Answer: Answer: How to install "blockwiseModules" in Bioconductor version 3.13
4.4 years ago ATpoint ★ 5.0k
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Answer: Answer: Convert SummarizedExperiment to SingleCellExperiment Object
4.4 years ago ATpoint ★ 5.0k
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Comment: Comment: Raw RNA-seq data: column names are sequences
4.4 years ago ATpoint ★ 5.0k
2
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1.7k
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Answer: Answer: Raw RNA-seq data: column names are sequences
4.4 years ago ATpoint ★ 5.0k
1,103 results • Page 18 of 23
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