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4.4k
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Comment: C: plotPCA in DESeq2
5.6 years ago ATpoint ★ 5.0k
0
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1
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4.4k
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Comment: C: plotPCA in DESeq2
5.6 years ago ATpoint ★ 5.0k
0
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1
reply
4.4k
views
Answer: C: plotPCA in DESeq2
5.6 years ago ATpoint ★ 5.0k
0
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0
replies
1.4k
views
Comment: C: DESeq Error (nbinomTest ())
5.6 years ago ATpoint ★ 5.0k
0
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2
replies
2.0k
views
Comment: C: Suggestion for next revision of edgeR User Guide re Design matrix setup
5.7 years ago ATpoint ★ 5.0k
0
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0
replies
675
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Comment: C: about function parameters
5.7 years ago ATpoint ★ 5.0k
1
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1
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1.9k
views
Answer: A: Better way to find head to head GRanges?
5.7 years ago ATpoint ★ 5.0k
1
vote
0
replies
4.0k
views
Comment: C: edgeR + tximport: calcNormFactors and the usage of offsets
5.7 years ago ATpoint ★ 5.0k
0
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0
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1.1k
views
Answer: C: Is there an easy way to do pos(x) <- pos(x) + 1 for a GPos object ?
5.7 years ago ATpoint ★ 5.0k
3
votes
1
reply
1.6k
views
Output lfc for Wilcox-based findMarkers
scran
updated 5.7 years ago by ★ 29k • written 5.7 years ago by ★ 5.0k
0
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1
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3.2k
views
Comment: C: full confounding between batch and treatment effects
5.7 years ago ATpoint ★ 5.0k
0
votes
1
reply
17k
views
Comment: C: keytype not supported in clusterprofiler when it is ensembl IDs?
5.7 years ago ATpoint ★ 5.0k
0
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0
replies
2.4k
views
Comment: C: error in creating kallisto index
5.8 years ago ATpoint ★ 5.0k
0
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0
replies
3.3k
views
Comment: C: how to do normalization using edageR
5.8 years ago ATpoint ★ 5.0k
0
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0
replies
843
views
Comment: C: How to upload a custom genome build at Galaxy
5.8 years ago ATpoint ★ 5.0k
0
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0
replies
12k
views
Comment: C: Clusterprofiler error: No gene can be mapped
5.8 years ago ATpoint ★ 5.0k
0
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0
replies
1.9k
views
Answer: A: csaw differential binding visualization
5.8 years ago ATpoint ★ 5.0k
1
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1
reply
3.2k
views
Answer: C: How to analyze pre-processed RNA-Seq data from GEO based on the deseq R package
5.8 years ago ATpoint ★ 5.0k
0
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0
replies
2.9k
views
Comment: C: selecting result from deseq2
5.8 years ago ATpoint ★ 5.0k
0
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0
replies
1.9k
views
Comment: C: DESeq2 result extraction
5.8 years ago ATpoint ★ 5.0k
0
votes
0
replies
953
views
Comment: C: a package with randomization/permutation tests for genomic analyses
5.9 years ago ATpoint ★ 5.0k
1
vote
0
replies
1.3k
views
Comment: C: How are the P and adjusted P values calculated in de_analysis() from Lipidr?
5.9 years ago ATpoint ★ 5.0k
1
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0
replies
1.3k
views
Answer: A: searching siRNA sequence (19bp) against human genome
6.0 years ago ATpoint ★ 5.0k
0
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0
replies
1.3k
views
Comment: C: Working with compressed fasta files?
6.0 years ago ATpoint ★ 5.0k
6
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11
replies
3.3k
views
Correct use of tximport in combination with edgeR cpm()
tximport edgeR
6.7 years ago • updated 6.0 years ago ATpoint ★ 5.0k
0
votes
1
reply
998
views
Comment: C: Resetting git bioconductor password
6.1 years ago ATpoint ★ 5.0k
2
votes
1
reply
1.7k
views
Using Input Samples in ChIP-seq Differential Analysis (csaw/edgeR)
csaw chip-seq
updated 6.1 years ago by ★ 29k • written 6.1 years ago by ★ 5.0k
0
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0
replies
1.6k
views
Rsamtools / rtracklayer creating csi index for BAM files
rsamtools rtracklayer
6.2 years ago ATpoint ★ 5.0k
0
votes
0
replies
2.5k
views
Comment: C: How to adjust and align timepoints on x-axis in the ggplot2
6.2 years ago ATpoint ★ 5.0k
1
vote
1
reply
1.7k
views
Answer: C: Paired t-test with DESeq2
6.3 years ago ATpoint ★ 5.0k
0
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0
replies
1.4k
views
Comment: C: How to find sites with H3K27me3 loss?
6.4 years ago ATpoint ★ 5.0k
0
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0
replies
2.2k
views
Comment: C: Deseq2 post functional annotation for metagenome
6.4 years ago ATpoint ★ 5.0k
1
vote
0
replies
2.5k
views
Comment: C: Merging two files based on the identifier column (gene symbols)?
6.4 years ago ATpoint ★ 5.0k
0
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0
replies
1.9k
views
Comment: C: DESeq2 unpaired RNAseq analysis
6.4 years ago ATpoint ★ 5.0k
3
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1
reply
2.5k
views
Correct use of TMM / normalization factors based on large bins
csaw TMM
6.4 years ago ATpoint ★ 5.0k
0
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0
replies
1.5k
views
Comment: C: Problem in featureCounts file.
6.5 years ago ATpoint ★ 5.0k
0
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2
replies
2.7k
views
Comment: C: Paired samples in cell lines using deseq2
6.5 years ago ATpoint ★ 5.0k
0
votes
1
reply
1.6k
views
Comment: C: Creating contrasts which do not include the reference level in limma, edgeR or D
6.6 years ago ATpoint ★ 5.0k
0
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0
replies
4.4k
views
Comment: C: Anbiguous instruction on how to set the blind value in DESeq2's vst function
6.6 years ago ATpoint ★ 5.0k
2
votes
2
replies
1.1k
views
InTAD: Sample Size and Statistical Power
InTAD
updated 6.6 years ago by ▴ 40 • written 6.6 years ago by ★ 5.0k
1
vote
0
replies
1.7k
views
Comment: C: DiffBind: Error in `.rowNamesDF<-`(x, value = value) : invalid 'row.names' lengt
6.7 years ago ATpoint ★ 5.0k
0
votes
0
replies
3.3k
views
Comment: C: Correct use of tximport in combination with edgeR cpm()
6.7 years ago ATpoint ★ 5.0k
0
votes
0
replies
3.3k
views
Comment: C: Correct use of tximport in combination with edgeR cpm()
6.7 years ago ATpoint ★ 5.0k
0
votes
0
replies
1.2k
views
Comment: C: scATAC-seq analysis, data preprocessing
6.7 years ago ATpoint ★ 5.0k
0
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1
reply
3.3k
views
Comment: C: Correct use of tximport in combination with edgeR cpm()
6.7 years ago ATpoint ★ 5.0k
0
votes
0
replies
3.3k
views
Comment: C: Correct use of tximport in combination with edgeR cpm()
6.7 years ago ATpoint ★ 5.0k
2
votes
1
reply
1.5k
views
Deactivate svalue=T in lfcShrink - DESeq2 - apeglm
deseq2 apeglm
updated 6.8 years ago by 43k • written 6.8 years ago by ★ 5.0k
0
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1
reply
2.8k
views
Comment: C: Unexpected MAplot after apeglm shrinkage in DESeq2
7.0 years ago ATpoint ★ 5.0k
0
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0
replies
1.6k
views
Comment: C: DESeq2 MA plot normalisation Issue
7.2 years ago ATpoint ★ 5.0k
4
votes
4
replies
2.8k
views
Unexpected MAplot after apeglm shrinkage in DESeq2
apeglm deseq2 rna-seq
updated 7.3 years ago by 43k • written 7.3 years ago by ★ 5.0k
1,105 results • Page 22 of 23
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