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Answer: Answer: Differential gene expression analysis results
8 days ago ATpoint ★ 4.1k
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Answer: Answer: normalization using Deseq2
9 days ago ATpoint ★ 4.1k
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224
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Answer: Answer: fgsea significant result
13 days ago ATpoint ★ 4.1k
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209
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Answer: Answer: Deseq2 and Normalization of RNA sequencing data
16 days ago ATpoint ★ 4.1k
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303
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Answer: Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
16 days ago ATpoint ★ 4.1k
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135
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Answer: Answer: putting my own expression data in deseq2
18 days ago ATpoint ★ 4.1k
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268
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Answer: Answer: DESeq2: Contrast for two conditions combined versus one condition (A+B_vs_C)
19 days ago ATpoint ★ 4.1k
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170
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Answer: Answer: ATACseq merge peaks
22 days ago ATpoint ★ 4.1k
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235
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Answer: Answer: Different Shrunk Log2FC according with reference
24 days ago ATpoint ★ 4.1k
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1.3k
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Answer: Answer: Why p value inconsistent when using different number of pathway score?
27 days ago ATpoint ★ 4.1k
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167
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Answer: Answer: DESEQ2 output gives multiple groups when only 2 groups are present
4 weeks ago ATpoint ★ 4.1k
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154
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Answer: Answer: Can you find the correct transcript in scRNA seq data
5 weeks ago ATpoint ★ 4.1k
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254
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Answer: Answer: Existence of Bioconductor versus Seurat Software Ecosystems Quantitative Compari
7 weeks ago ATpoint ★ 4.1k
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313
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Answer: Answer: RNA sequencing raw counts gene filtering
9 weeks ago ATpoint ★ 4.1k
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231
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Answer: Answer: i'm not getting any differentially expressed genes.
9 weeks ago ATpoint ★ 4.1k
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269
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Answer: Answer: Creating data matrix in Deseq2 from tximport data invalid class SummarizedExperi
9 weeks ago ATpoint ★ 4.1k
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220
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Answer: Answer: Perform PCA for sample clustering using DESeq2
9 weeks ago ATpoint ★ 4.1k
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255
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Answer: Answer: DESeq2 for pseudobulk analysis of scCITE-seq
10 weeks ago ATpoint ★ 4.1k
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222
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Answer: Answer: Unusually large fold-changes in Deseq2 results
10 weeks ago ATpoint ★ 4.1k
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382
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Answer: Answer: Is DESeq2 normalisation appropriate when counts were obtained for a small number
10 weeks ago ATpoint ★ 4.1k
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372
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Answer: Answer: Further clarification of unbalanced group sizes DESeq2
11 weeks ago ATpoint ★ 4.1k
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361
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Answer: Answer: Filter genes that have >= 1 cpm and are expressed in 80% of the case in the grou
12 weeks ago ATpoint ★ 4.1k
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587
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Answer: Answer: Average biological replicates in RNA-seq
12 weeks ago ATpoint ★ 4.1k
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244
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Answer: Answer: Problems with filtering DESeq Results (log2fold change)
12 weeks ago ATpoint ★ 4.1k
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190
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Answer: Answer: Inconsistency in DESeq2 Log fold change
3 months ago ATpoint ★ 4.1k
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272
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Answer: Answer: DESeq2 Results in Different Pvalue & Log2FC using the same code and data
3 months ago ATpoint ★ 4.1k
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437
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Answer: Answer: Graphing DEseq2 Normalized Counts using ggplot2
3 months ago ATpoint ★ 4.1k
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380
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Answer: Answer: DESeq2 nomalize value
3 months ago ATpoint ★ 4.1k
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287
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Answer: Answer: Cross-species analysis using DESeq2 - size factor computation
3 months ago ATpoint ★ 4.1k
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474
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Answer: Answer: scran package: quickCluster and calculateSumFactors parallelization
4 months ago ATpoint ★ 4.1k
2
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711
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Answer: Answer: DESeq2 median of ratios normalization instead of VST or rlog for ordinations?
4 months ago ATpoint ★ 4.1k
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606
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Answer: Answer: Can SVs identified from sva be used for removeBatchEffect() in DESeq2
4 months ago ATpoint ★ 4.1k
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438
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Answer: Answer: DESeq with multiple condition
4 months ago ATpoint ★ 4.1k
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416
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Answer: Answer: Deseq2 -Model matrix not full rank error: A complex case
4 months ago ATpoint ★ 4.1k
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525
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Answer: Answer: lfcSE always positive. Does this make sense?
4 months ago ATpoint ★ 4.1k
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609
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Answer: Answer: Read Count Normalisation and validation of analysis
4 months ago ATpoint ★ 4.1k
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709
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Answer: Answer: Should I use the 'log2FoldChange' from lfcShrink() to subset significant DEGs?
4 months ago ATpoint ★ 4.1k
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506
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Answer: Answer: DESeq2: the model matrix is not full rank issue
4 months ago ATpoint ★ 4.1k
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842
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Answer: Answer: scRNA-seq as pseudobulk for DEseq2: does AggregateExpression() normalize counts?
5 months ago ATpoint ★ 4.1k
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368
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Answer: Answer: tximport error with rsem files
5 months ago ATpoint ★ 4.1k
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350
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Answer: Answer: Running DESeq on normalized data
5 months ago ATpoint ★ 4.1k
4
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1.0k
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Answer: Answer: WGCNA documentation not available
5 months ago ATpoint ★ 4.1k
1
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894
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Answer: Answer: ScRNAseq analysis scran :: quickcluster Error
5 months ago ATpoint ★ 4.1k
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1.4k
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Answer: Answer: SingleR annotation of several slots/patients
5 months ago ATpoint ★ 4.1k
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624
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Answer: Answer: How does Deseq2 deal with the row with zero when calculating size factors
5 months ago ATpoint ★ 4.1k
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0
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353
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Answer: Answer: Differential gene expression analysis
5 months ago ATpoint ★ 4.1k
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733
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Answer: Answer: DESeq: Error in DESeqDataSet(se, design = design, ignoreRank) : some values i
5 months ago ATpoint ★ 4.1k
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324
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Answer: Answer: WGCNA less samples
5 months ago ATpoint ★ 4.1k
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931
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Answer: Answer: DropletUtils read10xcounts adds the 12 Cell Multiplexing Oligo tags as gene name
5 months ago ATpoint ★ 4.1k
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1
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519
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Answer: Answer: DESeq2 estimateSizeFactors iterate takes too long
5 months ago ATpoint ★ 4.1k
393 results • Page 1 of 8
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