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Answer: Answer: Differential gene expression analysis results
20 hours ago ATpoint ★ 4.1k
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Answer: Answer: normalization using Deseq2
1 day ago ATpoint ★ 4.1k
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Comment: Comment: deseq2 results
2 days ago ATpoint ★ 4.1k
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Comment: Comment: Extremely small p-values using Limma for proteomic data
2 days ago ATpoint ★ 4.1k
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262
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Comment: Comment: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
2 days ago ATpoint ★ 4.1k
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283
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Comment: Comment: Extremely small p-values using Limma for proteomic data
2 days ago ATpoint ★ 4.1k
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Comment: Comment: Couldn't connect to server while using "pathways"
4 days ago ATpoint ★ 4.1k
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207
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Comment: Comment: Too many significant genes when integrating gtex and tcga
5 days ago ATpoint ★ 4.1k
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185
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Answer: Answer: fgsea significant result
5 days ago ATpoint ★ 4.1k
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173
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Comment: Comment: Differences in differential analysis methods for RNA-Seq
8 days ago ATpoint ★ 4.1k
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169
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Answer: Answer: Deseq2 and Normalization of RNA sequencing data
8 days ago ATpoint ★ 4.1k
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173
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Comment: Comment: Differences in differential analysis methods for RNA-Seq
8 days ago ATpoint ★ 4.1k
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262
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Answer: Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
9 days ago ATpoint ★ 4.1k
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Answer: Answer: putting my own expression data in deseq2
10 days ago ATpoint ★ 4.1k
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249
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Comment: Comment: DESeq2: Contrast for two conditions combined versus one condition (A+B_vs_C)
11 days ago ATpoint ★ 4.1k
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249
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Answer: Answer: DESeq2: Contrast for two conditions combined versus one condition (A+B_vs_C)
11 days ago ATpoint ★ 4.1k
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Answer: Answer: ATACseq merge peaks
14 days ago ATpoint ★ 4.1k
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Comment: Comment: Deseq2. decontXcounts not integers. Useful alternative?
14 days ago ATpoint ★ 4.1k
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167
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Comment: Comment: Reproducibility issue with scran together with lapply and BiocParallel
15 days ago ATpoint ★ 4.1k
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Reproducibility issue with scran together with lapply and BiocParallel
scran BiocParallel bluster
16 days ago • updated 15 days ago ATpoint ★ 4.1k
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259
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Comment: Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge
16 days ago ATpoint ★ 4.1k
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224
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Answer: Answer: Different Shrunk Log2FC according with reference
16 days ago ATpoint ★ 4.1k
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362
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Comment: Comment: DESeq2 output used for PCA plot on R studio
16 days ago ATpoint ★ 4.1k
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1.2k
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Answer: Answer: Why p value inconsistent when using different number of pathway score?
20 days ago ATpoint ★ 4.1k
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247
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Comment: Comment: Differential peaks that were not identified in diffbind were identified in diseq
21 days ago ATpoint ★ 4.1k
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247
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Comment: Comment: Differential peaks that were not identified in diffbind were identified in diseq
22 days ago ATpoint ★ 4.1k
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104
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Comment: Comment: Input Question for deseq.r
22 days ago ATpoint ★ 4.1k
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156
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Answer: Answer: DESEQ2 output gives multiple groups when only 2 groups are present
22 days ago ATpoint ★ 4.1k
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137
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Comment: Comment: Deseq2 Rlog transformation
25 days ago ATpoint ★ 4.1k
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268
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Comment: Comment: A ComBat-seq issue: the covariates are confounded
26 days ago • updated 25 days ago ATpoint ★ 4.1k
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442
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Comment: Comment: Not fully paired differential gene expression analysis
27 days ago ATpoint ★ 4.1k
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175
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Comment: Comment: [DiffBind] Obtaining normalization factors
27 days ago ATpoint ★ 4.1k
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285
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Comment: Comment: Surrogate variable analysis for paired RNA seq experiment
29 days ago ATpoint ★ 4.1k
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285
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Comment: Comment: Surrogate variable analysis for paired RNA seq experiment
29 days ago ATpoint ★ 4.1k
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285
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Comment: Comment: Surrogate variable analysis for paired RNA seq experiment
29 days ago ATpoint ★ 4.1k
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145
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Answer: Answer: Can you find the correct transcript in scRNA seq data
4 weeks ago ATpoint ★ 4.1k
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442
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Comment: Comment: Not fully paired differential gene expression analysis
4 weeks ago ATpoint ★ 4.1k
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209
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Comment: Comment: Bluster and Varieties of Louvain Clulstering
5 weeks ago ATpoint ★ 4.1k
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363
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Comment: Comment: PCA of different bacterial species
6 weeks ago ATpoint ★ 4.1k
2
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245
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Answer: Answer: Existence of Bioconductor versus Seurat Software Ecosystems Quantitative Compari
6 weeks ago ATpoint ★ 4.1k
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302
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Comment: Comment: EDAseq to normalise for both gene-length and GC-content
7 weeks ago ATpoint ★ 4.1k
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302
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Comment: Comment: EDAseq to normalise for both gene-length and GC-content
7 weeks ago ATpoint ★ 4.1k
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295
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Comment: Comment: Extracting genomic sequences using agat and bedtools yields different results
7 weeks ago ATpoint ★ 4.1k
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272
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Comment: Comment: Help with Complex DESeq2 Design
7 weeks ago ATpoint ★ 4.1k
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204
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Comment: Comment: Visium RNA
7 weeks ago ATpoint ★ 4.1k
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2.2k
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Comment: Comment: Fail BiocManager::install(version='3.12')
7 weeks ago ATpoint ★ 4.1k
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330
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Comment: Comment: Missing Band on Volcano Plot from DESeq2
8 weeks ago ATpoint ★ 4.1k
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258
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Comment: Comment: Scores used for DiffBind's dba.plotHeatmap
8 weeks ago ATpoint ★ 4.1k
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291
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Answer: Answer: RNA sequencing raw counts gene filtering
8 weeks ago ATpoint ★ 4.1k
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218
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Answer: Answer: i'm not getting any differentially expressed genes.
8 weeks ago ATpoint ★ 4.1k
908 results • Page 1 of 19
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