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Answer: A: biomaRt: The query to the BioMart webservice returned an invalid result: biomaRt
5.6 years ago swbarnes2 ★ 1.4k
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2.0k
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Comment: C: Error:could not find function "DESeqDataSetFromHTSeqCount"
5.6 years ago swbarnes2 ★ 1.4k
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804
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Answer: A: Differential Expression by Chromosome using edgeR
5.6 years ago swbarnes2 ★ 1.4k
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Answer: A: BioMart: curl option when using getBM in loop
5.7 years ago swbarnes2 ★ 1.4k
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2.6k
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Comment: C: biomaRt getBM() returns nothing most of the times
5.7 years ago swbarnes2 ★ 1.4k
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2.6k
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Answer: A: biomaRt getBM() returns nothing most of the times
5.7 years ago swbarnes2 ★ 1.4k
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0
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5.6k
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Comment: C: R package for single-cell RNA-seq data from fastq to matrix
5.7 years ago swbarnes2 ★ 1.4k
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5.6k
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Comment: C: R package for single-cell RNA-seq data from fastq to matrix
5.7 years ago swbarnes2 ★ 1.4k
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1
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571
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Answer: A: I have four groups in my RNAseq experiment and want to compare them all to each
5.8 years ago swbarnes2 ★ 1.4k
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1.0k
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Comment: C: biomaRt not returning correct lists
5.8 years ago swbarnes2 ★ 1.4k
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4.1k
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Comment: C: DEseq2 design formula correcting for batch
5.8 years ago swbarnes2 ★ 1.4k
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4.1k
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Comment: C: DEseq2 design formula correcting for batch
5.8 years ago swbarnes2 ★ 1.4k
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1.0k
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Comment: C: Design matrix design for the differentially expression analysis
5.8 years ago swbarnes2 ★ 1.4k
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1.2k
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Answer: A: DESeq2 design formula
5.8 years ago swbarnes2 ★ 1.4k
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4.1k
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Comment: C: DEseq2 design formula correcting for batch
5.8 years ago swbarnes2 ★ 1.4k
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1
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4.1k
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Answer: A: DEseq2 design formula correcting for batch
5.8 years ago swbarnes2 ★ 1.4k
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787
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Comment: C: package is not available
5.8 years ago swbarnes2 ★ 1.4k
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1
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480
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Answer: C: Raw RNAseq data upload in DEseq2
5.8 years ago swbarnes2 ★ 1.4k
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2.3k
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Answer: A: How to extract DESeq2 results for a number of comparisons
5.8 years ago swbarnes2 ★ 1.4k
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1.3k
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Comment: C: Help with Deseq2 design
5.8 years ago swbarnes2 ★ 1.4k
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2
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1.8k
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Comment: C: DESeq2 model matrix question
5.8 years ago swbarnes2 ★ 1.4k
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1.8k
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Answer: A: DESeq2 model matrix question
5.8 years ago swbarnes2 ★ 1.4k
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1
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1.6k
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Comment: C: DeSeq2: error in design individuals nested within groups
5.9 years ago swbarnes2 ★ 1.4k
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892
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Answer: A: Error in biomaRt
5.9 years ago swbarnes2 ★ 1.4k
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4.5k
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Comment: C: DESeq2 swap ensembl gene id rownames with gene symbol column
5.9 years ago swbarnes2 ★ 1.4k
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3.5k
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Answer: A: Understanding interactions in DESeq2
5.9 years ago swbarnes2 ★ 1.4k
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1
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3.7k
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Comment: C: featureCount error - cannot identify gene_id
6.0 years ago swbarnes2 ★ 1.4k
2
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3.5k
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Answer: A: How to perform DEseq2 on datasets without replicates or merged replicates
6.0 years ago swbarnes2 ★ 1.4k
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0
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2.0k
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Answer: A: DESeq2 comparison of treatment within tissue type, ignoring other tissue type
6.0 years ago swbarnes2 ★ 1.4k
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0
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1.0k
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Answer: A: DESeq2 analysis. Understanding results() and the design formula.
6.0 years ago swbarnes2 ★ 1.4k
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1
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2.8k
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Answer: A: interpreting FC values from glmTreat, especially unshrunk log-fold-changes
6.0 years ago swbarnes2 ★ 1.4k
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1
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554
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Answer: A: BiomaRt Error: "character string of length 1."
6.0 years ago swbarnes2 ★ 1.4k
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1
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1.8k
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Comment: C: DESeq2 analysis with multiple factors
6.1 years ago swbarnes2 ★ 1.4k
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6
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1.5k
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Anyone else having trouble with biomaRt (Oct 10, 2019)
ensembl biomaRt
updated 6.1 years ago by ★ 6.6k • written 6.1 years ago by ★ 1.4k
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Comment: C: Anyone else having trouble with biomaRt (Oct 10, 2019)
6.1 years ago swbarnes2 ★ 1.4k
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1.5k
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Comment: C: Anyone else having trouble with biomaRt (Oct 10, 2019)
6.1 years ago swbarnes2 ★ 1.4k
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0
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1.6k
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Answer: A: Paired t-test with DESeq2
6.1 years ago swbarnes2 ★ 1.4k
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1
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2.4k
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Answer: A: DESeq2: compare all tpts to baseline and pull results table accordingly
6.1 years ago swbarnes2 ★ 1.4k
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1
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3.0k
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Comment: C: Batch effects between different sequencing runs
6.1 years ago swbarnes2 ★ 1.4k
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2
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3.0k
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Answer: A: Batch effects between different sequencing runs
6.1 years ago swbarnes2 ★ 1.4k
2
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1
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1.9k
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Answer: A: bwa mem to feature Counts
6.1 years ago swbarnes2 ★ 1.4k
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1
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1.9k
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Answer: A: DEseq2 design for knockdown conditions and treatment
6.2 years ago swbarnes2 ★ 1.4k
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1
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1.1k
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Comment: C: Responder Vs Non-Responders Paired Comparison DESeq2
6.2 years ago swbarnes2 ★ 1.4k
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2
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1.9k
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Comment: C: How to align to genome and transcriptome coordinates at the same time with STAR?
6.2 years ago swbarnes2 ★ 1.4k
2
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0
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727
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Answer: A: rlog in reference level
6.2 years ago swbarnes2 ★ 1.4k
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1
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1.9k
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Comment: C: is our edgeR code doing what we think it does?
6.2 years ago swbarnes2 ★ 1.4k
2
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2
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1.9k
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Answer: A: is our edgeR code doing what we think it does?
6.2 years ago swbarnes2 ★ 1.4k
1
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1
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1.6k
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Answer: A: Design for introducing batch effect in DESeq2
6.2 years ago swbarnes2 ★ 1.4k
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0
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1.6k
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Answer: A: gene Isoforms quantification using RNA-seq data
6.2 years ago swbarnes2 ★ 1.4k
1
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0
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1.3k
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Answer: A: How to perform RNA-seq with such MDS plot?
6.2 years ago swbarnes2 ★ 1.4k
475 results • Page 8 of 10
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