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Answer: Answer: Sign Output Values PADOG
12 months ago Tarca, Adi ▴ 570
0
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871
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Comment: Comment: can not retrieve the version of the package that is shown n R CMD daily checks
3.9 years ago Tarca, Adi ▴ 570
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2
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871
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can not retrieve the version of the package that is shown n R CMD daily checks
PADOG git
3.9 years ago Tarca, Adi ▴ 570
4
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1
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1.7k
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Answer: A: SPIA::spia function output
7.9 years ago Tarca, Adi ▴ 570
1
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4
replies
1.6k
views
summarizeOverlaps error with hg38
summarizeOverlaps
updated 8.8 years ago by 16k • written 8.8 years ago by ▴ 570
0
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1
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1.6k
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Comment: C: summarizeOverlaps error with hg38
8.8 years ago Tarca, Adi ▴ 570
1
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1
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2.6k
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Comment: C: (Gene-set)Pathway analysis based on network/pathway topology in R
9.3 years ago Tarca, Adi ▴ 570
1
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0
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2.1k
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Comment: C: Question on graphite/SPIA; extracting DE gene list
9.7 years ago Tarca, Adi ▴ 570
1
vote
6
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4.8k
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Making data visible in packages (no visible binding for global variable ...)
updated 10.0 years ago by ▴ 10 • written 16.1 years ago by ▴ 570
0
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1
reply
2.2k
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Answer: A: UCSC data anomaly in 50638 transcript(s): the cds cumulative length is
10.5 years ago Tarca, Adi ▴ 570
0
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0
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1.5k
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Answer: A: SPIA
10.7 years ago Tarca, Adi ▴ 570
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0
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1.6k
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Answer: A: makeSPIAdata
10.9 years ago Tarca, Adi ▴ 570
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0
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2.8k
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Answer: A: SPIA error - Error in density.default(pfstmp, bw = sd(pfstmp)/4) : \'bw\' is not
11.0 years ago Tarca, Adi ▴ 570
0
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1
reply
1.2k
views
Negative parameter error when using goseq
GO goseq GO goseq
updated 11.7 years ago by ▴ 320 • written 11.7 years ago by ▴ 570
0
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0
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1.8k
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SPIA algorithm organisms not included already in the SPIA package
Organism SPIA goseq KEGGREST Organism SPIA goseq KEGGREST
11.7 years ago Tarca, Adi ▴ 570
0
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0
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1.5k
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changes in SPIA package: using updated KEGG pathway data
Organism SPIA Organism SPIA
11.8 years ago Tarca, Adi ▴ 570
0
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0
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1.3k
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Bioconductor Digest, Vol 119, Issue 5: Overrepresentation pathway with KEGGPROFILE and SPIA
Pathways SPIA KEGGprofile Pathways SPIA KEGGprofile
11.9 years ago Tarca, Adi ▴ 570
0
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0
replies
881
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error in dmrFinder of charm package when there is one sample per group
charm charm
12.4 years ago Tarca, Adi ▴ 570
0
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0
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954
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charm package using MEDIP protocol
charm charm
12.5 years ago Tarca, Adi ▴ 570
0
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0
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2.2k
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Answer: A: about reduce function in GenomicRanges
12.9 years ago Tarca, Adi ▴ 570
0
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7
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2.2k
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about reduce function in GenomicRanges
Alignment Alignment
12.9 years ago Tarca, Adi ▴ 570
0
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2
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2.2k
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Comment: C: about reduce function in GenomicRanges
12.9 years ago Tarca, Adi ▴ 570
0
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1
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2.2k
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Comment: C: about reduce function in GenomicRanges
12.9 years ago Tarca, Adi ▴ 570
0
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0
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2.6k
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Answer: A: Problem in SPIA: de must be a vector of log2 fold changes. The names of de shoul
12.9 years ago Tarca, Adi ▴ 570
0
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0
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1.5k
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SPIA package
Pathways Organism SPIA Pathways Organism SPIA
13.0 years ago Tarca, Adi ▴ 570
0
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0
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1.2k
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question for you on SPIA package
Pathways Organism SPIA Pathways Organism SPIA
13.2 years ago Tarca, Adi ▴ 570
0
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0
replies
2.5k
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Comment: C: foreach, doMC, and GOstats problems
13.7 years ago Tarca, Adi ▴ 570
0
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1
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2.5k
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Comment: C: foreach, doMC, and GOstats problems
13.7 years ago Tarca, Adi ▴ 570
0
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1
reply
2.5k
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Comment: C: foreach, doMC, and GOstats problems
13.7 years ago Tarca, Adi ▴ 570
0
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8
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2.5k
views
foreach, doMC, and GOstats problems
GO GOstats GO GOstats
updated 13.7 years ago by ★ 8.2k • written 13.7 years ago by ▴ 570
0
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0
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1.1k
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Bioconductor Digest, Vol 94, Issue 10
Pathways SPIA Pathways SPIA
14.0 years ago Tarca, Adi ▴ 570
0
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0
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1.5k
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Bioconductor Digest, Vol 93, Issue 26: How to create KEGG's pathway data for SPIA?
Organism KEGGgraph SPIA Organism KEGGgraph SPIA
14.0 years ago Tarca, Adi ▴ 570
0
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0
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1.5k
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SPIA: inferring inhibited pathways from up-regulated genes?
Pathways SPIA Pathways SPIA
14.9 years ago Tarca, Adi ▴ 570
0
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0
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1.4k
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SPIA, hacked to run with only selected pathways
SystemsBiology Pathways Cancer SPIA SystemsBiology Pathways Cancer SPIA
15.0 years ago Tarca, Adi ▴ 570
0
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0
replies
762
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Answer: A: Where classification worked better ?
15.2 years ago Tarca, Adi ▴ 570
0
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2
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1.3k
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GO.db and Gostats question
Annotation GO PROcess GOstats Annotation GO PROcess GOstats
updated 15.2 years ago by ★ 7.2k • written 15.2 years ago by ▴ 570
0
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0
replies
759
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Machine Learning Applications in Bioinformatics and Computational Biology (ICMLA 2009)
15.5 years ago Tarca, Adi ▴ 570
0
votes
2
replies
1.3k
views
Affy Exon arrays
affy exonmap affy exonmap
updated 15.5 years ago by ★ 3.9k • written 15.5 years ago by ▴ 570
0
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0
replies
1.4k
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FDR control in conditional Hypergeometric test
Annotation GO GOstats Annotation GO GOstats
15.6 years ago Tarca, Adi ▴ 570
0
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0
replies
4.8k
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Comment: C: Making data visible in packages (no visible binding for global variable ...)
16.1 years ago Tarca, Adi ▴ 570
0
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1
reply
4.8k
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Comment: C: Making data visible in packages (no visible binding for global variable ...)
16.1 years ago Tarca, Adi ▴ 570
0
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0
replies
3.3k
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Comment: C: limma contrasts with multiple groups
16.2 years ago Tarca, Adi ▴ 570
0
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2
replies
3.3k
views
limma contrasts with multiple groups
limma limma
updated 16.2 years ago by 67k • written 16.2 years ago by ▴ 570
0
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1
reply
1.3k
views
Comment: C: RMA on a batch with NA values
16.3 years ago Tarca, Adi ▴ 570
0
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4
replies
1.3k
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RMA on a batch with NA values
probe probe
updated 16.3 years ago by 67k • written 16.3 years ago by ▴ 570
0
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1
reply
952
views
Loading more than 16 annotation packages fails
Annotation hu35ksubb Annotation hu35ksubb
updated 16.3 years ago by ▴ 150 • written 16.3 years ago by ▴ 570
0
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0
replies
1.9k
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Comment: C: HumanRef-8_V3
16.5 years ago Tarca, Adi ▴ 570
0
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1
reply
1.9k
views
Comment: C: HumanRef-8_V3
16.5 years ago Tarca, Adi ▴ 570
0
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1
reply
1.9k
views
Comment: C: HumanRef-8_V3
16.5 years ago Tarca, Adi ▴ 570
0
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0
replies
1.9k
views
Comment: C: HumanRef-8_V3
16.5 years ago Tarca, Adi ▴ 570
59 results • Page 1 of 2
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