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Answer: Answer: Sign Output Values PADOG
2.0 years ago Tarca, Adi ▴ 570
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1.1k
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Comment: Comment: can not retrieve the version of the package that is shown n R CMD daily checks
5.0 years ago Tarca, Adi ▴ 570
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2
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1.1k
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can not retrieve the version of the package that is shown n R CMD daily checks
PADOG git
5.0 years ago Tarca, Adi ▴ 570
4
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1
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2.0k
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Answer: A: SPIA::spia function output
8.9 years ago Tarca, Adi ▴ 570
1
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4
replies
2.0k
views
summarizeOverlaps error with hg38
summarizeOverlaps
updated 9.8 years ago by 16k • written 9.9 years ago by ▴ 570
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2.0k
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Comment: C: summarizeOverlaps error with hg38
9.8 years ago Tarca, Adi ▴ 570
1
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1
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2.9k
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Comment: C: (Gene-set)Pathway analysis based on network/pathway topology in R
10.4 years ago Tarca, Adi ▴ 570
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0
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2.4k
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Comment: C: Question on graphite/SPIA; extracting DE gene list
10.7 years ago Tarca, Adi ▴ 570
1
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6
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5.3k
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Making data visible in packages (no visible binding for global variable ...)
updated 11.0 years ago by ▴ 10 • written 17.1 years ago by ▴ 570
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1
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2.6k
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Answer: A: UCSC data anomaly in 50638 transcript(s): the cds cumulative length is
11.5 years ago Tarca, Adi ▴ 570
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0
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1.6k
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Answer: A: SPIA
11.7 years ago Tarca, Adi ▴ 570
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1.8k
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Answer: A: makeSPIAdata
11.9 years ago Tarca, Adi ▴ 570
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0
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3.0k
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Answer: A: SPIA error - Error in density.default(pfstmp, bw = sd(pfstmp)/4) : \'bw\' is not
12.0 years ago Tarca, Adi ▴ 570
0
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1
reply
1.4k
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Negative parameter error when using goseq
GO goseq GO goseq
updated 12.7 years ago by ▴ 320 • written 12.7 years ago by ▴ 570
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0
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2.0k
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SPIA algorithm organisms not included already in the SPIA package
Organism SPIA goseq KEGGREST Organism SPIA goseq KEGGREST
12.8 years ago Tarca, Adi ▴ 570
0
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0
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1.7k
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changes in SPIA package: using updated KEGG pathway data
Organism SPIA Organism SPIA
12.8 years ago Tarca, Adi ▴ 570
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0
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1.5k
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Bioconductor Digest, Vol 119, Issue 5: Overrepresentation pathway with KEGGPROFILE and SPIA
Pathways SPIA KEGGprofile Pathways SPIA KEGGprofile
12.9 years ago Tarca, Adi ▴ 570
0
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0
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992
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error in dmrFinder of charm package when there is one sample per group
charm charm
13.5 years ago Tarca, Adi ▴ 570
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0
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1.1k
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charm package using MEDIP protocol
charm charm
13.5 years ago Tarca, Adi ▴ 570
0
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7
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2.6k
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about reduce function in GenomicRanges
Alignment Alignment
13.9 years ago Tarca, Adi ▴ 570
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0
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2.6k
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Answer: A: about reduce function in GenomicRanges
13.9 years ago Tarca, Adi ▴ 570
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2
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2.6k
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Comment: C: about reduce function in GenomicRanges
13.9 years ago Tarca, Adi ▴ 570
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1
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2.6k
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Comment: C: about reduce function in GenomicRanges
13.9 years ago Tarca, Adi ▴ 570
0
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0
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2.9k
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Answer: A: Problem in SPIA: de must be a vector of log2 fold changes. The names of de shoul
13.9 years ago Tarca, Adi ▴ 570
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0
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1.7k
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SPIA package
Pathways Organism SPIA Pathways Organism SPIA
14.0 years ago Tarca, Adi ▴ 570
0
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0
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1.3k
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question for you on SPIA package
Pathways Organism SPIA Pathways Organism SPIA
14.2 years ago Tarca, Adi ▴ 570
0
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0
replies
2.9k
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Comment: C: foreach, doMC, and GOstats problems
14.7 years ago Tarca, Adi ▴ 570
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1
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2.9k
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Comment: C: foreach, doMC, and GOstats problems
14.7 years ago Tarca, Adi ▴ 570
0
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1
reply
2.9k
views
Comment: C: foreach, doMC, and GOstats problems
14.7 years ago Tarca, Adi ▴ 570
0
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8
replies
2.9k
views
foreach, doMC, and GOstats problems
GO GOstats GO GOstats
updated 14.7 years ago by ★ 8.2k • written 14.7 years ago by ▴ 570
0
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0
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1.3k
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Bioconductor Digest, Vol 94, Issue 10
Pathways SPIA Pathways SPIA
15.0 years ago Tarca, Adi ▴ 570
0
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0
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1.7k
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Bioconductor Digest, Vol 93, Issue 26: How to create KEGG's pathway data for SPIA?
Organism KEGGgraph SPIA Organism KEGGgraph SPIA
15.0 years ago Tarca, Adi ▴ 570
0
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0
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1.7k
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SPIA: inferring inhibited pathways from up-regulated genes?
Pathways SPIA Pathways SPIA
16.0 years ago Tarca, Adi ▴ 570
0
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0
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1.6k
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SPIA, hacked to run with only selected pathways
SystemsBiology Pathways Cancer SPIA SystemsBiology Pathways Cancer SPIA
16.0 years ago Tarca, Adi ▴ 570
0
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0
replies
952
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Answer: A: Where classification worked better ?
16.2 years ago Tarca, Adi ▴ 570
0
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2
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1.5k
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GO.db and Gostats question
Annotation GO PROcess GOstats Annotation GO PROcess GOstats
updated 16.2 years ago by ★ 7.2k • written 16.2 years ago by ▴ 570
0
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0
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878
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Machine Learning Applications in Bioinformatics and Computational Biology (ICMLA 2009)
16.5 years ago Tarca, Adi ▴ 570
0
votes
2
replies
1.5k
views
Affy Exon arrays
affy exonmap affy exonmap
updated 16.5 years ago by ★ 3.9k • written 16.5 years ago by ▴ 570
0
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0
replies
1.6k
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FDR control in conditional Hypergeometric test
Annotation GO GOstats Annotation GO GOstats
16.6 years ago Tarca, Adi ▴ 570
0
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0
replies
5.3k
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Comment: C: Making data visible in packages (no visible binding for global variable ...)
17.1 years ago Tarca, Adi ▴ 570
0
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1
reply
5.3k
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Comment: C: Making data visible in packages (no visible binding for global variable ...)
17.1 years ago Tarca, Adi ▴ 570
0
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0
replies
3.6k
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Comment: C: limma contrasts with multiple groups
17.2 years ago Tarca, Adi ▴ 570
0
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2
replies
3.6k
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limma contrasts with multiple groups
limma limma
updated 17.2 years ago by 68k • written 17.2 years ago by ▴ 570
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1
reply
1.5k
views
Comment: C: RMA on a batch with NA values
17.3 years ago Tarca, Adi ▴ 570
0
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4
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1.5k
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RMA on a batch with NA values
probe probe
updated 17.3 years ago by 68k • written 17.3 years ago by ▴ 570
0
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1
reply
1.1k
views
Loading more than 16 annotation packages fails
Annotation hu35ksubb Annotation hu35ksubb
updated 17.4 years ago by ▴ 150 • written 17.4 years ago by ▴ 570
0
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0
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2.3k
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Comment: C: HumanRef-8_V3
17.5 years ago Tarca, Adi ▴ 570
0
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1
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2.3k
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Comment: C: HumanRef-8_V3
17.5 years ago Tarca, Adi ▴ 570
0
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1
reply
2.3k
views
Comment: C: HumanRef-8_V3
17.5 years ago Tarca, Adi ▴ 570
0
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0
replies
2.3k
views
Comment: C: HumanRef-8_V3
17.5 years ago Tarca, Adi ▴ 570
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