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Comment: C: Coefficient names for multiple group comparisons to use with lfcShrink & apeglm
5.0 years ago coulsonr ▴ 20
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Coefficient names for multiple group comparisons to use with lfcShrink & apeglm
deseq2 lfcShrink apeglm
updated 5.0 years ago by 43k • written 5.0 years ago by ▴ 20
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Comment: C: Calculate S/N ratios from apeglm for GSEA
5.6 years ago coulsonr ▴ 20
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Calculate S/N ratios from apeglm for GSEA
apeglm fgsea Signal-To-Noise Ratio
updated 5.6 years ago by 43k • written 5.6 years ago by ▴ 20
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Log2 fold-change shrinkage fails with lfcShrink when using the 'apeglm' method
deseq2 apeglm lfcshrink
6.4 years ago coulsonr ▴ 20
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Answer: A: Log2 fold-change shrinkage fails with lfcShrink when using the 'apeglm' method
6.4 years ago coulsonr ▴ 20
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Comment: C: Log2 fold-change shrinkage fails with lfcShrink when using the 'apeglm' method
6.4 years ago coulsonr ▴ 20
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