Showing : fgsea • reset
0
votes
0
replies
814
views
fgsea: ranking genes using log2FC and pvalues derived from spline model
fgsea GeneSetEnrichment splines RNASeq
11 months ago GT • 0
2
votes
2
replies
1.4k
views
fgsea stuck in an infinite loop in the middle of the run
GSEABase fgsea msigdb GeneSetEnrichment
18 months ago Assa Yeroslaviz ★ 1.5k
4
votes
4
replies
2.2k
views
NAs in fgseaMultilevel
fgsea
updated 19 months ago by ▴ 280 • written 19 months ago by • 0
1
vote
13
replies
3.1k
views
Ranking the GSEA Results
fgsea log2FC
20 months ago • updated 19 months ago V_Vibes • 0
0
votes
0
replies
700
views
Filtering the genesets for fgseaMultiLevel
msigdb fgsea msig
20 months ago Tanvi • 0
4
votes
5
replies
2.2k
views
Method to find pathways different between 2 groups
fgsea GSVA CAMERA
22 months ago • updated 21 months ago Chris ▴ 20
2
votes
2
replies
2.2k
views
fgsea significant result
fgsea
22 months ago Chris ▴ 20
4
votes
2
replies
2.0k
views
Why does GSEA on edgeR results for randomized samples give highly significant p-values?
fgsea edgeR
22 months ago gene_bioconductor ▴ 10
0
votes
0
replies
605
views
Empty table plot using plotGseaTable()
fgsea
22 months ago Chris ▴ 20
2
votes
4
replies
2.6k
views
Perform gene set enrichment analysis using fgsea on two conditions that don't have differential express genes
fgsea
written 22 months ago by ▴ 20
0
votes
8
replies
3.9k
views
FGSEA pre-ranked input in increasing order or decreasing
fgsea
updated 20 months ago by ▴ 280 • written 22 months ago by • 0
1
vote
5
replies
1.5k
views
fgsea fork
fgsea
updated 23 months ago by 68k • written 23 months ago by • 0
0
votes
2
replies
2.3k
views
The order of those tied genes will be arbitrary, which may produce unexpected results.
fgsea gsea
23 months ago Gordon • 0
0
votes
5
replies
2.2k
views
Help with DESeq results to pathways with the fgsea package
fgsea rna
updated 2.0 years ago by 68k • written 2.1 years ago by • 0
3
votes
2
replies
983
views
cant' download fgsea_1.20.0.tar.gz
download fgsea
2.6 years ago • updated 2.5 years ago luca.s ▴ 50
0
votes
0
replies
1.3k
views
using fgsea to compare two datasets
GSEA fgsea
2.6 years ago Cen • 0
0
votes
0
replies
2.6k
views
fgsea/clusterProfiler Packages for nCounter data enrichment analysis
NanoStringDiff clusterProfiler fgsea
2.8 years ago pg45863 ▴ 10
7
votes
6
replies
5.4k
views
Implementation of the "original" GSEA algorithm in R
clusterProfiler GSEA fgsea
updated 3.2 years ago by 53k • written 3.2 years ago by ▴ 70
0
votes
0
replies
801
views
is it possible to limit fgsea to particular tissue type?
fgsea
3.3 years ago kavator ▴ 30
0
votes
4
replies
2.0k
views
GO data for fgsea: should ensembl data be augmented to contain parent terms?
biomaRt GO ensembldb fgsea
3.4 years ago dario.beraldi • 0
0
votes
8
replies
4.0k
views
Problem with fgsea
fgsea
updated 20 months ago by 68k • written 3.9 years ago by • 0
2
votes
3
replies
6.3k
views
fgsea not downloading due to new r version. Is there a way around this?
r fgsea
4.1 years ago amir.khan • 0
0
votes
1
reply
3.9k
views
Tied Ranks in fgsea
fgsea
updated 4.8 years ago by ★ 4.1k • written 4.8 years ago by • 0
2
votes
3
replies
2.9k
views
Compute fgsea with my own database with R version 4.0.2
R fgsea
updated 4.8 years ago by ▴ 280 • written 4.8 years ago by • 0
3
votes
3
replies
7.0k
views
Warning with the example of GSEA
fgsea fgse
4.9 years ago • updated 4.8 years ago julie.hardy • 0
2
votes
2
replies
4.3k
views
fgsea usage question - what gene set to use?
fgsea
5.0 years ago alexandr.gopanenko ▴ 50
0
votes
2
replies
2.4k
views
Error: Aesthetics must be either length 1 or the same as the data (1): x and xend
fgsea
updated 5.0 years ago by ★ 4.0k • written 5.0 years ago by ▴ 20
0
votes
3
replies
3.9k
views
why does stat column disappears after lfcshrink on deseq 2 and why does fgsea uses stat column (not affected by shrinking) for fgsea?
fgsea DESeq2
updated 5.0 years ago by ★ 5.0k • written 5.0 years ago by ▴ 30
0
votes
1
reply
1.9k
views
do expression of leading edges within a negative NES term reflect the same direction as it's enrichment score? aka downregulation of leading edges
fgsea
updated 5.7 years ago by ▴ 280 • written 5.7 years ago by ▴ 30
1
vote
2
replies
2.5k
views
what does gseaparam argument in fgsea() means?
fgsea
updated 5.7 years ago by ▴ 280 • written 5.7 years ago by ▴ 30
3
votes
2
replies
2.4k
views
Calculate S/N ratios from apeglm for GSEA
apeglm fgsea Signal-To-Noise Ratio
updated 6.8 years ago by 43k • written 6.8 years ago by ▴ 20
8
votes
5
replies
5.4k
views
How to get t-statistic values using edgeR?
r edger t-statistic fgsea gsea
updated 6.8 years ago by 53k • written 6.8 years ago by ▴ 120
0
votes
3
replies
4.8k
views
fgsea p-values are mostly the same upon analysis
fgsea gsea sc-rnaseq
7.6 years ago atakanekiz ▴ 30
1
vote
2
replies
2.5k
views
ReactomePA / Reactome: GSEA error message
reactomepa reactome gsea fgsea
7.7 years ago martin.busch • 0
1
vote
5
replies
3.1k
views
FGSEA only runs with <1000 permutations
fgsea gsea
updated 8.6 years ago by ▴ 280 • written 8.6 years ago by • 0
0
votes
8
replies
4.0k
views
Does fgsea order the stats argument?
fgsea
8.7 years ago rubi ▴ 110
6
votes
15
replies
4.7k
views
Change in pathway IDs scheme in reactome.db
reactome.db fgsea
updated 8.9 years ago by ▴ 150 • written 8.9 years ago by ▴ 280
2
votes
1
reply
2.4k
views
Direction aware fgsea test
fgsea gsea
updated 9.1 years ago by ▴ 280 • written 9.1 years ago by ▴ 110
38 results • Page 1 of 1
Recent ...
Replies
Answer: Inconsistencies between accessor functions for TxDb databases with selected seql by a2a2hd42aa • 0
Technical inconsistencies in database accessors can disrupt your workflow, but finding a reliable source to download online mobile games sh…
Comment: Can sample-level weights be used when analysing GSVA scores in limma? by A.Barden ▴ 20
Thanks both for this useful information.
Comment: Reproducibility of code in various Bioconductor versions by Gordon Smyth 53k
SNPlocs.Hsapiens.dbSNP155.GRCh38 is available for download from the same location as always. It has not changed since Bioc 3.20: Presumabl…
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack by a2a2hd42aa • 0
Similarly, for structural complexity in the [He777 Game][1] APK, having precise control over every detail is what makes a high-performance …
Answer: Issue loading and downloading Bioconductor 3.22 packages after update by strawberry3 • 0
Hi, thank you all for the advice. Using James's advice, I managed to install SNPlocs.Hsapiens.dbSNP155.GRCh38, but it took almost half an …
Votes
Do I map probes to gene symbols BEFORE or AFTER differentially expressed gene analysis?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
Awards • All
Popular Question to Gordon Smyth 53k
Popular Question to Matan G. ▴ 60
Popular Question to Jaqueline • 0
Popular Question to Dario Strbenac ★ 1.6k
Popular Question to chirag.parsania ▴ 10
Locations • All
Melbourne, Australia, 15 minutes ago
Australia, 33 minutes ago
The city by the bay, 2 hours ago
WEHI, Melbourne, Australia, 4 hours ago
United States, 4 hours ago
Traffic: 1347 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6