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0
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4
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3.7k
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How do you find your orthologues?
11.9 years ago k. brand ▴ 420
0
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8
replies
1.8k
views
package ‘DAVIDQuery’ is not available (for R version 2.14.0)
updated 12.5 years ago by 25k • written 12.5 years ago by ▴ 420
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4
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2.8k
views
heatmap 'contrast': suggestions for a zlim adjustment in heatmap.2
updated 13.7 years ago by ▴ 430 • written 13.7 years ago by ▴ 420
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6
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1.7k
views
heatplot() 1. red-*black*-green palette, 2.suppress drawing of the row dendrogram (but NOT row reordering)
Microarray Microarray
updated 13.8 years ago by 65k • written 13.8 years ago by ▴ 420
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3
replies
4.6k
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heatmap.2 - change column & row locations; angle / rotate
updated 13.8 years ago by ▴ 20 • written 13.8 years ago by ▴ 420
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votes
1
reply
943
views
limma, duplicateCorrelation, dupfit$consensus = 1: concerning?
14.0 years ago k. brand ▴ 420
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0
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766
views
function similar to phyper function that can handle 3 or more gene lists
14.1 years ago k. brand ▴ 420
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5
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1.1k
views
package or code to quantify the significance of the venn overlap between 2 or 3 lists of genes
updated 14.2 years ago by ★ 13k • written 14.2 years ago by ▴ 420
1
vote
5
replies
3.9k
views
limma warning: Coefficients not estimable
limma limma
updated 14.2 years ago by 50k • written 14.3 years ago by ▴ 420
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votes
2
replies
2.7k
views
Parameter names must by syntactically valid names in R
updated 14.3 years ago by ★ 7.4k • written 14.3 years ago by ▴ 420
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votes
0
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817
views
Another limma factorial that needs controlling and pairing
limma limma
14.3 years ago k. brand ▴ 420
0
votes
1
reply
889
views
default fdr rate in limma/affylmgui
affylmGUI affylmGUI
updated 16.1 years ago by 65k • written 16.1 years ago by ▴ 420
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votes
1
reply
1.8k
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using simpleaffy incorrectly, or is there a problem with the read.affy function?
Microarray Survival Cancer genefilter affy simpleaffy affyio Microarray Survival Cancer
17.3 years ago k. brand ▴ 420
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0
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540
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Has anyone implemented Friedman's Test for AffyBatch?
17.6 years ago k. brand ▴ 420
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2
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1.1k
views
"normalize.quantiles.robust" produces the SAME intensities from different weights?!
Normalization affydata gcrma matchprobes affyPLM affyio Normalization affydata gcrma
updated 17.6 years ago by ★ 1.2k • written 17.6 years ago by ▴ 420
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votes
0
replies
966
views
method for removing consistent technical bias?
affy affydata vsn limma gcrma matchprobes affyPLM affyio affy affydata vsn limma gcrma
17.7 years ago k. brand ▴ 420
0
votes
2
replies
963
views
normalize.quantiles.robust: how to implement weights for different arrays?
cdf gcrma matchprobes affyPLM affyio cdf gcrma matchprobes affyPLM affyio
updated 17.7 years ago by ★ 6.5k • written 17.7 years ago by ▴ 420
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votes
0
replies
938
views
4 replicates, of 3 tissues- one good hyb (2xreps), one bad hyb (2xreps). Best way forward?
qPCR affy affydata vsn limma gcrma matchprobes affyPLM affyio BRAIN qPCR affy affydata
17.7 years ago k. brand ▴ 420
0
votes
3
replies
1000
views
summarizing probe intensites before or after normalization- 1. how to do with RMA 2. Opinions?
Normalization probe affy affyio Normalization probe affy affyio
updated 17.7 years ago by ★ 1.2k • written 17.7 years ago by ▴ 420
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