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Comment: Comment: compareCluster dotplot: how to modify the genesets order
9 months ago Guido Hooiveld ★ 4.1k
2
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2
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1.1k
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Answer: Answer: How many of my genes from my gene list are in each KEGG pathway?
9 months ago Guido Hooiveld ★ 4.1k
10
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41
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7.6k
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Ensembl plants at annotationHub?
ensembl ensembldb plant arabidopsis thaliana annotationhub
updated 8 months ago by • 0 • written 6.2 years ago by ★ 4.1k
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0
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476
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Comment: Comment: Help with identifying genes mapped to KEGG pathway using pathview
10 months ago Guido Hooiveld ★ 4.1k
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1
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1.2k
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Answer: Answer: The order of those tied genes will be arbitrary, which may produce unexpected re
10 months ago Guido Hooiveld ★ 4.1k
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1
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885
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Comment: Comment: Only positive enrichment score in GSEA
10 months ago Guido Hooiveld ★ 4.1k
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1
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5.0k
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Answer: Answer: enrichGOgradient color change
10 months ago Guido Hooiveld ★ 4.1k
0
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0
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527
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Comment: Comment: Error in enrichKEGG for a model organism
11 months ago Guido Hooiveld ★ 4.1k
1
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0
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1.5k
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Comment: Comment: Error MakeOrgPackagefromNCBI
12 months ago Guido Hooiveld ★ 4.1k
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1
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1.5k
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Comment: Comment: Error MakeOrgPackagefromNCBI
12 months ago Guido Hooiveld ★ 4.1k
0
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1
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924
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Answer: Answer: Problem with buildGOmap from clusterProfiler
12 months ago Guido Hooiveld ★ 4.1k
0
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1
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3.3k
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Comment: Comment: Looking for documentation about the use of "split = .sign" in enrichplot's dotpl
12 months ago Guido Hooiveld ★ 4.1k
1
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1
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3.3k
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Comment: Comment: Looking for documentation about the use of "split = .sign" in enrichplot's dotpl
12 months ago Guido Hooiveld ★ 4.1k
1
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1
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3.3k
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Comment: Comment: Looking for documentation about the use of "split = .sign" in enrichplot's dotpl
12 months ago Guido Hooiveld ★ 4.1k
1
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0
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894
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Comment: Comment: Enrichement with clusterProfiler and biomart
12 months ago Guido Hooiveld ★ 4.1k
1
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1
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895
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Comment: Comment: Access genes associated with GO terms for a topGO object created with gene2GO
12 months ago Guido Hooiveld ★ 4.1k
0
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0
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9.3k
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Comment: Comment: No gene can be mapped error with clusterprofiler
13 months ago Guido Hooiveld ★ 4.1k
0
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0
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3.5k
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Comment: Comment: clusterProfiler - custom annotations
13 months ago Guido Hooiveld ★ 4.1k
1
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0
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3.4k
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Comment: Comment: clusterProfiler for KEGG enrichment (non-model species) Over-Representation Anal
13 months ago Guido Hooiveld ★ 4.1k
0
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0
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6.3k
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Comment: Comment: GO enrichment analysis on Solanum lycopersicum proteomics dataset (UniProt IDs)
13 months ago Guido Hooiveld ★ 4.1k
0
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0
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819
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Comment: Comment: Error Oligo package asking for pd.2.0 package annotation
13 months ago Guido Hooiveld ★ 4.1k
0
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1
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819
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Answer: Answer: Error Oligo package asking for pd.2.0 package annotation
13 months ago Guido Hooiveld ★ 4.1k
0
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0
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1.9k
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Comment: Comment: How can we use the organism database created by makeorgPackageFromNCBI to KEGG a
14 months ago Guido Hooiveld ★ 4.1k
0
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1
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1.9k
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Comment: Comment: How can we use the organism database created by makeorgPackageFromNCBI to KEGG a
14 months ago Guido Hooiveld ★ 4.1k
0
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0
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1.4k
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Comment: Comment: It's possible to use clusterProfiler without an annotationDBI package
14 months ago Guido Hooiveld ★ 4.1k
0
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1
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1.4k
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Comment: Comment: It's possible to use clusterProfiler without an annotationDBI package
14 months ago Guido Hooiveld ★ 4.1k
0
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1
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1.4k
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Comment: Comment: It's possible to use clusterProfiler without an annotationDBI package
14 months ago Guido Hooiveld ★ 4.1k
0
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2
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1.4k
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Comment: Comment: It's possible to use clusterProfiler without an annotationDBI package
14 months ago Guido Hooiveld ★ 4.1k
0
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1
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1.4k
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Answer: Answer: It's possible to use clusterProfiler without an annotationDBI package
14 months ago Guido Hooiveld ★ 4.1k
1
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0
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2.0k
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Comment: Comment: Annotation hub and clusterProfiler errors
15 months ago Guido Hooiveld ★ 4.1k
0
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0
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1.5k
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Comment: Comment: Important Bioconductor Release 3.18 deadlines this week
15 months ago Guido Hooiveld ★ 4.1k
1
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1
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1.3k
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Comment: Comment: Help with orgdb for non-model species via makeOrgPackageFromNCBI
15 months ago Guido Hooiveld ★ 4.1k
0
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0
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4.8k
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Comment: Comment: NCBI Locus ID to gene ID conversion
16 months ago Guido Hooiveld ★ 4.1k
0
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0
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2.7k
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Comment: Comment: pathview error "negative length vectors are not allowed
16 months ago Guido Hooiveld ★ 4.1k
0
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1
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2.7k
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Comment: Comment: pathview error "negative length vectors are not allowed
16 months ago Guido Hooiveld ★ 4.1k
0
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1
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1.0k
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Comment: Comment: Why do I obtain Identical Adj.P value when running edgeR ?
16 months ago Guido Hooiveld ★ 4.1k
1
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1
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1.6k
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Answer: Answer: Cluster profiler emap plot - what are the annotations?
17 months ago Guido Hooiveld ★ 4.1k
0
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1
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2.4k
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Answer: Answer: apply clusterProfiler::simplify on merge_result list
17 months ago Guido Hooiveld ★ 4.1k
2
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1
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707
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Answer: Answer: Broken UNITE 9.0 link (General FASTA Release)
17 months ago Guido Hooiveld ★ 4.1k
1
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0
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2.0k
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Comment: Comment: ERROR in EnrichKEGG(), 'species should be listed' in, download method do not cha
17 months ago Guido Hooiveld ★ 4.1k
1
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1
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1.6k
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Comment: Comment: pathview - a species in KEGG pathway but not in 'korg'
19 months ago Guido Hooiveld ★ 4.1k
1
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1
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789
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Answer: Answer: Affymetrix analysis Chiptype hgu133plus2hsentrezg.db vs hgu133plus2.db
20 months ago Guido Hooiveld ★ 4.1k
0
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0
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6.4k
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Comment: Comment: Genelist input for ClusterProfiler
20 months ago Guido Hooiveld ★ 4.1k
1
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1
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7.6k
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Comment: Comment: Ensembl plants at annotationHub?
20 months ago Guido Hooiveld ★ 4.1k
0
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1
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1.7k
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Comment: Comment: enhanced volcano , different -log10pvalue of the same gene
21 months ago Guido Hooiveld ★ 4.1k
0
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1
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1.6k
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Comment: Comment: failed to use tximport for creating count matrix from kallisto
21 months ago Guido Hooiveld ★ 4.1k
1
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1
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1.6k
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Comment: Comment: failed to use tximport for creating count matrix from kallisto
21 months ago Guido Hooiveld ★ 4.1k
1
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1
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1.6k
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Comment: Comment: failed to use tximport for creating count matrix from kallisto
21 months ago Guido Hooiveld ★ 4.1k
0
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1
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2.1k
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Comment: Comment: enrichKEGG function error
21 months ago Guido Hooiveld ★ 4.1k
0
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1
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2.1k
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Answer: Answer: enrichKEGG function error
21 months ago Guido Hooiveld ★ 4.1k
722 results • Page 2 of 15
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