Bioconductor Plant

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ensembl ensembldb plant arabidopsis thaliana annotationhub

updated 14 days ago by Bruno • 0 • written 4.8 years ago by Guido Hooiveld ★ 3.7k

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3

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plant Transcriptomics DESeq2 r

updated 18 months ago by Basti ▴ 720 • written 18 months ago by cicely.day • 0

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deseq2 goseq htseqcounts rnaseq plant

updated 7.3 years ago by Gordon Smyth 48k • written 7.3 years ago by Ben Mansfeld • 0

3 results • Page 1 of 1

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Comment: DMRcate design by Jitendra ▴ 10

Thanks James, do I also need to mention 'contrasts=FALSE' in cpg.annotate.And also what to mentions in analysis.type="differential",/ "ANO…

Comment: Speeding up of DelayedArray::write_block() by Koki ▴ 10

I don't know the details but do you mean using `HDF5RealizationSink` or `TENxRealizationSink` will make it possible to writing sparse multi…

Comment: DelayedArray::read_sparse_block by Koki ▴ 10

Ok, I understood. How about "writing" to HDF5? Are you going to implement `write_block_as_sparse` in `SparseArray` package?

Comment: DelayedArray::read_sparse_block by Hervé Pagès 16k

> So do you means the specification change from DelayedArray's read_sparse_block to SparseArray's read_block_as_sparse will accelerate the …

Comment: DelayedArray::read_sparse_block by Koki ▴ 10

Thanks for your reply. So do you means the specification change from `DelayedArray`'s `read_sparse_block` to `SparseArray`'s `read_block_a…

Votes

Answer: DMRcate design

Comment: DMRcate design

Answer: What MetaPhlAn3 database was used in cMD 3?

Comment: Speeding up of DelayedArray::write_block()

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