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Comment: C: DESeq2: Sample outlier patterns 'switching' after normalization
5.3 years ago wunderl ▴ 40
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Answer: A: TMM Normalization: DESeqDataSet: some values in assay are negative
5.4 years ago wunderl ▴ 40
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Comment: C: TMM Normalization: DESeqDataSet: some values in assay are negative
5.4 years ago wunderl ▴ 40
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DESeq2: Sample outlier patterns 'switching' after normalization
deseq2 normalization
updated 5.4 years ago by 43k • written 5.4 years ago by ▴ 40
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1.1k
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All Pairwise Comparisons with DESeq2 While Controlling for Batch Effects: Does Reference Level Matter?
deseq2 differential expression batch correction design
updated 5.5 years ago by 43k • written 5.5 years ago by ▴ 40
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Comment: C: Batch Correction: DESeq2 Linear Model vs Batch-Correction-Specific Algorithms (R
5.5 years ago wunderl ▴ 40
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Answer: A: DESeq2 GLM modelling and Wald's test
5.5 years ago wunderl ▴ 40
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1.6k
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Comment: C: Batch Correction: DESeq2 Linear Model vs Batch-Correction-Specific Algorithms (R
5.5 years ago wunderl ▴ 40
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4
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1.6k
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Batch Correction: DESeq2 Linear Model vs Batch-Correction-Specific Algorithms (RUV, ComBat, ect.)
deseq2 differential expression batch correction
updated 5.5 years ago by 43k • written 5.5 years ago by ▴ 40
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1.0k
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featureCounts Does Not Correctly Parse File Names
Rsubread featureCounts
updated 5.6 years ago by 52k • written 5.6 years ago by ▴ 40
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