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Comment: Comment: What number components should I use if I want to show 2D and 3D UMAP
19 months ago Guandong Shang ▴ 40
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Comment: Comment: how to plot a fitting line on the testPseudotime
20 months ago Guandong Shang ▴ 40
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Comment: Comment: how to do downstram analysis to cells which are subsetted after MNN batch-correc
21 months ago Guandong Shang ▴ 40
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1.5k
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Comment: Comment: Subclustering after MNN batch-correction
21 months ago Guandong Shang ▴ 40
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Comment: Comment: how to make the "reconstructed" value in intergated scRNA-seq UMAP plot more rea
21 months ago Guandong Shang ▴ 40
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Comment: Comment: how to make the "reconstructed" value in intergated scRNA-seq UMAP plot more rea
21 months ago Guandong Shang ▴ 40
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1.7k
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Comment: Comment: FeaturePlot in scater
22 months ago Guandong Shang ▴ 40
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1.1k
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Comment: Comment: Can GSVA be applied in several sample type and each type only have two replicate
23 months ago Guandong Shang ▴ 40
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1.8k
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Comment: Comment: what's the difference between this two AnnotationDbi::select type in GO select
2.7 years ago Guandong Shang ▴ 40
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1.8k
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Comment: Comment: what's the difference between this two AnnotationDbi::select type in GO select
2.7 years ago Guandong Shang ▴ 40
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1.4k
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Comment: Comment: lfcShrink probelm in many 0 count genes RNA-seq data
2.7 years ago Guandong Shang ▴ 40
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1.4k
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Comment: Comment: lfcShrink probelm in many 0 count genes RNA-seq data
2.7 years ago Guandong Shang ▴ 40
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2.9k
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Comment: Comment: weird MAplot or volcano plot of DESeq2 diff result
2.7 years ago Guandong Shang ▴ 40
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2.9k
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Comment: Comment: weird MAplot or volcano plot of DESeq2 diff result
2.7 years ago Guandong Shang ▴ 40
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1.2k
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Comment: Comment: The compare result is different in score and Conc in DiffBind
3.3 years ago Guandong Shang ▴ 40
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1.2k
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Comment: Comment: The compare result is different in score and Conc in DiffBind
3.3 years ago Guandong Shang ▴ 40
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1.2k
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Comment: Comment: The compare result is different in score and Conc in DiffBind
3.3 years ago Guandong Shang ▴ 40
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1.2k
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Comment: Comment: The compare result is different in score and Conc in DiffBind
3.3 years ago Guandong Shang ▴ 40
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1.4k
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Comment: Comment: Conc_1 in differnet dba.report result is slightly different
3.3 years ago Guandong Shang ▴ 40
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1.4k
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Comment: Comment: Conc_1 in differnet dba.report result is slightly different
3.3 years ago Guandong Shang ▴ 40
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1.4k
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Comment: Comment: Conc_1 in differnet dba.report result is slightly different
3.3 years ago Guandong Shang ▴ 40
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1.4k
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Comment: Comment: first error: could not find function "readGAlignments" in BiocParallel
3.3 years ago Guandong Shang ▴ 40
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13k
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Comment: C: DESeq2: one condition vs multiple combined
3.5 years ago Guandong Shang ▴ 40
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13k
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Comment: C: DESeq2: one condition vs multiple combined
3.6 years ago Guandong Shang ▴ 40
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3.3k
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Comment: C: How to get all possible comparisons in DiffBind
3.9 years ago Guandong Shang ▴ 40
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1.1k
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Comment: C: how to get the estimated libSize in DiffBind
3.9 years ago Guandong Shang ▴ 40
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1.1k
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Comment: C: how to get the estimated libSize in DiffBind
3.9 years ago Guandong Shang ▴ 40
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874
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Comment: C: A problem about RNA-seq workflow:9 Time course experiments
3.9 years ago Guandong Shang ▴ 40
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689
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Comment: C: Some confuse in ?results example of DESeq2
4.0 years ago Guandong Shang ▴ 40
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689
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Comment: C: Some confuse in ?results example of DESeq2
4.0 years ago Guandong Shang ▴ 40
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1.1k
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Comment: C: diffBind: differentially bound sites are highly different between using EDGER an
4.0 years ago Guandong Shang ▴ 40
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1.4k
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Comment: C: how to deal with the replicate count when do k-means or someother machine-learni
4.0 years ago Guandong Shang ▴ 40
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1
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1.4k
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Comment: C: how to deal with the replicate count when do k-means or someother machine-learni
4.0 years ago Guandong Shang ▴ 40
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1.1k
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Comment: C: how to close the recognizes features of type miRNA in "makeTxDbFromGFF"
4.1 years ago Guandong Shang ▴ 40
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1.1k
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Comment: C: how to close the recognizes features of type miRNA in "makeTxDbFromGFF"
4.1 years ago Guandong Shang ▴ 40
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869
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Comment: C: Some confuse about the DBA_SCORE_TMM_READS_EFFECTIVE_CPM in DiffBind
4.1 years ago Guandong Shang ▴ 40
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842
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Comment: C: The coordinate system problem about DiffBind output
4.1 years ago Guandong Shang ▴ 40
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1.0k
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Comment: C: ChIPSeeker - options(ChIPseeker.downstreamDistance = 500) seems not work
4.2 years ago Guandong Shang ▴ 40
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871
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Comment: C: I am wondering whether Gviz can support a plot like ggridges
4.5 years ago Guandong Shang ▴ 40
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1.1k
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Comment: C: A Problem about seqnames() in GenomicRanges
4.7 years ago Guandong Shang ▴ 40
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1.1k
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Comment: C: A Problem about seqnames() in GenomicRanges
4.7 years ago Guandong Shang ▴ 40
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1.1k
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Comment: C: A Problem about seqnames() in GenomicRanges
4.7 years ago Guandong Shang ▴ 40
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