Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
1.8k
views
Comment: Comment: What number components should I use if I want to show 2D and 3D UMAP
2.5 years ago Guandong Shang ▴ 40
1
vote
2
replies
1.8k
views
What number components should I use if I want to show 2D and 3D UMAP
scater UAMP scRNAseq
2.5 years ago Guandong Shang ▴ 40
0
votes
0
replies
809
views
Answer: Answer: Converting from TAIR 8 to TAIR11
2.6 years ago Guandong Shang ▴ 40
0
votes
0
replies
1.6k
views
Comment: Comment: how to plot a fitting line on the testPseudotime
2.6 years ago Guandong Shang ▴ 40
0
votes
2
replies
1.6k
views
how to plot a fitting line on the testPseudotime
Pseudotime testPseudotime TSCAN SingleCell OSCA
2.6 years ago Guandong Shang ▴ 40
0
votes
0
replies
1.6k
views
Comment: Comment: how to do downstram analysis to cells which are subsetted after MNN batch-correc
2.7 years ago Guandong Shang ▴ 40
4
votes
2
replies
1.6k
views
how to do downstram analysis to cells which are subsetted after MNN batch-correction
batchelor fastMNN scRNAseq
2.7 years ago Guandong Shang ▴ 40
0
votes
4
replies
2.7k
views
how to make the "reconstructed" value in intergated scRNA-seq UMAP plot more readable
scater batchelor scRNAseq fastMNN
updated 2.7 years ago by ★ 28k • written 2.7 years ago by ▴ 40
0
votes
0
replies
2.3k
views
Comment: Comment: Subclustering after MNN batch-correction
2.7 years ago Guandong Shang ▴ 40
0
votes
0
replies
2.7k
views
Comment: Comment: how to make the "reconstructed" value in intergated scRNA-seq UMAP plot more rea
2.7 years ago Guandong Shang ▴ 40
0
votes
0
replies
2.7k
views
Comment: Comment: how to make the "reconstructed" value in intergated scRNA-seq UMAP plot more rea
2.7 years ago Guandong Shang ▴ 40
0
votes
0
replies
1.5k
views
how to calculate similarity between each cluster in scRNA and bulk RNA-seq
SingleR scRNAseq
2.8 years ago Guandong Shang ▴ 40
0
votes
0
replies
2.5k
views
Comment: Comment: FeaturePlot in scater
2.8 years ago Guandong Shang ▴ 40
3
votes
2
replies
2.5k
views
FeaturePlot in scater
scater OSCA
2.8 years ago Guandong Shang ▴ 40
0
votes
0
replies
1.6k
views
Comment: Comment: Can GSVA be applied in several sample type and each type only have two replicate
2.9 years ago Guandong Shang ▴ 40
1
vote
2
replies
1.6k
views
Can GSVA be applied in several sample type and each type only have two replicates ?
GSVA
3.7 years ago • updated 2.9 years ago Guandong Shang ▴ 40
0
votes
0
replies
2.8k
views
Comment: Comment: what's the difference between this two AnnotationDbi::select type in GO select
3.7 years ago Guandong Shang ▴ 40
0
votes
1
reply
2.8k
views
Comment: Comment: what's the difference between this two AnnotationDbi::select type in GO select
3.7 years ago Guandong Shang ▴ 40
1
vote
6
replies
2.8k
views
what's the difference between this two AnnotationDbi::select type in GO select
GO.db AnnotationDbi
updated 3.6 years ago by • 0 • written 3.7 years ago by ▴ 40
0
votes
0
replies
1.5k
views
Answer: Answer: Help me do a gene enrichment analysis
3.7 years ago Guandong Shang ▴ 40
0
votes
1
reply
2.0k
views
Comment: Comment: lfcShrink probelm in many 0 count genes RNA-seq data
3.7 years ago Guandong Shang ▴ 40
0
votes
1
reply
2.0k
views
Comment: Comment: lfcShrink probelm in many 0 count genes RNA-seq data
3.7 years ago Guandong Shang ▴ 40
1
vote
4
replies
3.6k
views
weird MAplot or volcano plot of DESeq2 diff result
DESeq2
updated 3.7 years ago by 43k • written 3.7 years ago by ▴ 40
1
vote
5
replies
2.0k
views
lfcShrink probelm in many 0 count genes RNA-seq data
ashr DESeq2 apeglm
updated 3.7 years ago by 43k • written 3.7 years ago by ▴ 40
0
votes
0
replies
3.6k
views
Comment: Comment: weird MAplot or volcano plot of DESeq2 diff result
3.7 years ago Guandong Shang ▴ 40
0
votes
0
replies
3.6k
views
Comment: Comment: weird MAplot or volcano plot of DESeq2 diff result
3.7 years ago Guandong Shang ▴ 40
2
votes
1
reply
36k
views
Answer: Answer: DESeq2 normalization vs VST vs rlog
3.9 years ago Guandong Shang ▴ 40
3
votes
2
replies
1.1k
views
Should I create a new class or using Common Classes
GenomicRanges
updated 3.9 years ago by 16k • written 3.9 years ago by ▴ 40
0
votes
0
replies
881
views
how to construct a SNPlocs-class by myself
BSgenome SNPlocs
4.0 years ago Guandong Shang ▴ 40
0
votes
0
replies
1.8k
views
Comment: Comment: The compare result is different in score and Conc in DiffBind
4.2 years ago Guandong Shang ▴ 40
0
votes
1
reply
1.8k
views
Comment: Comment: The compare result is different in score and Conc in DiffBind
4.2 years ago Guandong Shang ▴ 40
1
vote
2
replies
1.0k
views
How to make BiocParallel work in DiffBind when working under windows system
DiffBind
updated 4.2 years ago by 25k • written 4.2 years ago by ▴ 40
0
votes
1
reply
1.8k
views
Comment: Comment: The compare result is different in score and Conc in DiffBind
4.2 years ago Guandong Shang ▴ 40
0
votes
0
replies
1.8k
views
Comment: Comment: The compare result is different in score and Conc in DiffBind
4.2 years ago Guandong Shang ▴ 40
1
vote
7
replies
1.8k
views
Conc_1 in differnet dba.report result is slightly different
DiffBind
updated 4.2 years ago by ★ 5.2k • written 4.3 years ago by ▴ 40
1
vote
8
replies
1.8k
views
The compare result is different in score and Conc in DiffBind
DiffBind
4.3 years ago • updated 4.2 years ago Guandong Shang ▴ 40
0
votes
0
replies
1.8k
views
Answer: Answer: The compare result is different in score and Conc in DiffBind
4.3 years ago Guandong Shang ▴ 40
0
votes
0
replies
1.8k
views
Answer: Answer: Conc_1 in differnet dba.report result is slightly different
4.3 years ago Guandong Shang ▴ 40
0
votes
0
replies
1.8k
views
Comment: Comment: Conc_1 in differnet dba.report result is slightly different
4.3 years ago Guandong Shang ▴ 40
0
votes
0
replies
1.8k
views
Comment: Comment: Conc_1 in differnet dba.report result is slightly different
4.3 years ago Guandong Shang ▴ 40
0
votes
1
reply
1.8k
views
Comment: Comment: Conc_1 in differnet dba.report result is slightly different
4.3 years ago Guandong Shang ▴ 40
0
votes
0
replies
1.9k
views
Comment: Comment: first error: could not find function "readGAlignments" in BiocParallel
4.3 years ago Guandong Shang ▴ 40
3
votes
3
replies
1.9k
views
first error: could not find function "readGAlignments" in BiocParallel
BiocParallel
4.3 years ago Guandong Shang ▴ 40
2
votes
5
replies
1.5k
views
how to get the estimated libSize in DiffBind
diffbind
updated 4.5 years ago by ★ 5.2k • written 4.9 years ago by ▴ 40
1
vote
2
replies
936
views
Can I completely repeat the DiffBind results using DESeq2?
diffbind
updated 4.5 years ago by ★ 5.2k • written 4.9 years ago by ▴ 40
0
votes
0
replies
15k
views
Comment: C: DESeq2: one condition vs multiple combined
4.5 years ago Guandong Shang ▴ 40
0
votes
1
reply
15k
views
Comment: C: DESeq2: one condition vs multiple combined
4.5 years ago Guandong Shang ▴ 40
2
votes
5
replies
1.6k
views
stat value is throwed out after lfcShrink in DESeq2
deseq2
updated 8 months ago by 43k • written 4.7 years ago by ▴ 40
0
votes
1
reply
4.4k
views
Comment: C: How to get all possible comparisons in DiffBind
4.9 years ago Guandong Shang ▴ 40
0
votes
0
replies
1.5k
views
Comment: C: how to get the estimated libSize in DiffBind
4.9 years ago Guandong Shang ▴ 40
78 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6