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2
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3
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9.5k
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Answer: A: Pre-processing RNA-seq data (normalization and transformation) for GSVA
7.7 years ago Robert Castelo ★ 3.4k
0
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0
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11k
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Comment: C: Does GSVA enrichment score comes negative?
7.8 years ago Robert Castelo ★ 3.4k
0
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1
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11k
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Comment: C: Does GSVA enrichment score comes negative?
7.8 years ago Robert Castelo ★ 3.4k
0
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1
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1.8k
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Comment: C: The selection of bandwidth of GSVA
7.8 years ago Robert Castelo ★ 3.4k
0
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1
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1.8k
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Answer: A: The selection of bandwidth of GSVA
7.8 years ago Robert Castelo ★ 3.4k
1
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0
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3.3k
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Answer: A: GSVA for single sample
7.9 years ago Robert Castelo ★ 3.4k
0
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1
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1.5k
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Answer: A: Run tweeDEseq on Flux-capacitor RPKM values
7.9 years ago Robert Castelo ★ 3.4k
2
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1
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2.0k
views
Answer: A: Error thrown by GSEABase::getBroadSets function: Error: 'getBroadSets' failed to
8.0 years ago Robert Castelo ★ 3.4k
1
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0
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2.7k
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Comment: C: [gwascat] Updated GWAS catalog from file
8.0 years ago Robert Castelo ★ 3.4k
1
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1
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2.7k
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Answer: A: [gwascat] Updated GWAS catalog from file
8.0 years ago Robert Castelo ★ 3.4k
3
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0
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1.5k
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Answer: A: Gene missing in TxDb.Hsapiens.UCSC.hg19.knownGene
8.1 years ago Robert Castelo ★ 3.4k
0
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1
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3.3k
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Comment: C: How to set 'strandMode' with summarizeOverlaps()
8.1 years ago Robert Castelo ★ 3.4k
0
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1
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3.3k
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Comment: C: How to set 'strandMode' with summarizeOverlaps()
8.1 years ago Robert Castelo ★ 3.4k
0
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1
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3.3k
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Comment: C: How to set 'strandMode' with summarizeOverlaps()
8.1 years ago Robert Castelo ★ 3.4k
5
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8
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3.3k
views
How to set 'strandMode' with summarizeOverlaps()
GenomicAlignments
8.1 years ago Robert Castelo ★ 3.4k
0
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0
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2.2k
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Comment: C: How to build a RNA-seq table of counts for repeatmasker annotations
8.1 years ago Robert Castelo ★ 3.4k
0
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1
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2.2k
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Comment: C: How to build a RNA-seq table of counts for repeatmasker annotations
8.1 years ago Robert Castelo ★ 3.4k
2
votes
4
replies
2.2k
views
How to build a RNA-seq table of counts for repeatmasker annotations
GenomicFeatures repeatmasker GenomicAlignments
updated 8.1 years ago by ★ 11k • written 8.1 years ago by ★ 3.4k
0
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1
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3.5k
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Comment: C: GSVA package scores are opposite on mac and windows
updated 8.2 years ago by 25k • written 8.2 years ago by ★ 3.4k
0
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1
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3.5k
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Comment: C: GSVA package scores are opposite on mac and windows
8.2 years ago Robert Castelo ★ 3.4k
0
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1
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3.5k
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Comment: C: GSVA package scores are opposite on mac and windows
8.2 years ago Robert Castelo ★ 3.4k
0
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1
reply
3.5k
views
Answer: A: GSVA package scores are opposite on mac and windows
8.2 years ago Robert Castelo ★ 3.4k
0
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3
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3.5k
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Comment: C: GSVA package scores are opposite on mac and windows
8.2 years ago Robert Castelo ★ 3.4k
0
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0
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3.5k
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Comment: C: GSVA package scores are opposite on mac and windows
8.2 years ago Robert Castelo ★ 3.4k
8
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3
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2.6k
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Why edgeR::aveLogCPM() is simlar to log2(rowMeans(cpm)) instead of rowMeans(cpm(y, log=TRUE))
edgeR rnaseq limma independent filtering
8.3 years ago Robert Castelo ★ 3.4k
0
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1
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2.6k
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Comment: C: Why edgeR::aveLogCPM() is simlar to log2(rowMeans(cpm)) instead of rowMeans(cpm(
8.3 years ago Robert Castelo ★ 3.4k
0
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1
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3.4k
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Comment: C: Bioconductor packages now each have a DOI.
8.3 years ago Robert Castelo ★ 3.4k
0
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0
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2.0k
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Answer: A: Set rnaseq locial flag during GSVA
8.3 years ago Robert Castelo ★ 3.4k
0
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0
replies
1.9k
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Comment: C: library VaraintFiltration looking for explanation of pedigree file
8.3 years ago Robert Castelo ★ 3.4k
0
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0
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1.9k
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Answer: A: library VaraintFiltration looking for explanation of pedigree file
8.3 years ago Robert Castelo ★ 3.4k
0
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0
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3.5k
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Comment: C: how to extract read alignments from reads aligning in mulitple locations
8.5 years ago Robert Castelo ★ 3.4k
0
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1
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3.5k
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Comment: C: how to extract read alignments from reads aligning in mulitple locations
8.5 years ago Robert Castelo ★ 3.4k
5
votes
4
replies
3.5k
views
how to extract read alignments from reads aligning in mulitple locations
rsamtools genomicalignments genomicfeatures
updated 8.5 years ago by ★ 1.6k • written 8.5 years ago by ★ 3.4k
0
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0
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7.3k
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Comment: C: RNAseq with technical replicates: Does it sound right?
8.5 years ago Robert Castelo ★ 3.4k
1
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1
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3.4k
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Answer: A: GSVA: questions about the bootstrap p-value
8.5 years ago Robert Castelo ★ 3.4k
0
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1
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5.2k
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Comment: C: mm10 phastCons data for use with ATACseqQC
8.6 years ago Robert Castelo ★ 3.4k
1
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1
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5.2k
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Answer: A: mm10 phastCons data for use with ATACseqQC
8.6 years ago Robert Castelo ★ 3.4k
0
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0
replies
14k
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Comment: C: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
8.6 years ago Robert Castelo ★ 3.4k
0
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1
reply
14k
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Comment: C: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
8.6 years ago Robert Castelo ★ 3.4k
5
votes
1
reply
14k
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Answer: A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
8.6 years ago Robert Castelo ★ 3.4k
0
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0
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11k
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Comment: C: Does GSVA enrichment score comes negative?
8.6 years ago Robert Castelo ★ 3.4k
0
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0
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1.6k
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Answer: A: FUNCTIONAL ENRICHMENT ANALYSIS
8.6 years ago Robert Castelo ★ 3.4k
3
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1
reply
3.3k
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Answer: A: GSVA indifferent to 'abs.ranking'
8.6 years ago Robert Castelo ★ 3.4k
3
votes
1
reply
1.9k
views
Answer: A: Crash GSVA 1.24.0 with bootstrapping
8.6 years ago Robert Castelo ★ 3.4k
2
votes
1
reply
4.3k
views
Answer: A: How to convert graphNEL object into Adjacency Matrix?
8.7 years ago Robert Castelo ★ 3.4k
1
vote
1
reply
1.9k
views
Answer: A: qpgraph's qpPCC function giving different results than cor.test()
8.9 years ago Robert Castelo ★ 3.4k
0
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0
replies
2.1k
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Comment: C: [GSVM] bootstrapping error
8.9 years ago Robert Castelo ★ 3.4k
0
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1
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2.1k
views
Comment: C: [GSVM] bootstrapping error
8.9 years ago Robert Castelo ★ 3.4k
1
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2
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2.1k
views
Answer: A: [GSVM] bootstrapping error
8.9 years ago Robert Castelo ★ 3.4k
0
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1
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4.9k
views
Comment: C: Unable to calculate in parallel what can be calculated on a for loop
9.1 years ago Robert Castelo ★ 3.4k
466 results • Page 5 of 10
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